RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 GPATCH3Q96I76 525 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 NEK1Q96PY6 1258 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 EIF2AQ9BY44 585 aaKnown RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 KIF9Q9HAQ2 790 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 DDX21Q9NR30 783 aaKnown RBP eCLIP6.07□□□□□ -1.44
CD44-236ENST00000533222 HELLSQ9NRZ9 838 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 GULP1Q9UBP9 304 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 GPR160Q9UJ42 338 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 FAM184BQ9ULE4 1060 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 SCAF8Q9UPN6 1271 aaKnown RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 MRPS23Q9Y3D9 190 aaKnown RBP6.07□□□□□ -1.44
CD44-236ENST00000533222 ABCC9O60706 1549 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 ASXL2Q76L83 1435 aa6.07□□□□□ -1.44
CD44-236ENST00000533222 CLRN2A0PK11 232 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 C7orf72A4D263 438 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 FITM1A5D6W6 292 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 SRRM3A6NNA2 597 aaPredicted RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 TTC34A8MYJ7 566 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 EIF3FO00303 357 aaPredicted RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 MEFVO15553 781 aaPredicted RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 RNF8O76064 485 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 TMCC1O94876 653 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 RPSAP08865 295 aaKnown RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 ATP5JP18859 108 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 POLR2EP19388 210 aaKnown RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 SDHBP21912 280 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 TACR1P25103 407 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 ACADVLP49748 655 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 PEX5P50542 639 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 CLNS1AP54105 237 aaKnown RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 BASP1P80723 227 aaKnown RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 MRPS25P82663 173 aaKnown RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 MYBPC3Q14896 1274 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 TNIP1Q15025 636 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 SLC14A2Q15849 920 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 CCDC153Q494R4 210 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 TMEM67Q5HYA8 995 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 CC2D1AQ6P1N0 951 aaPredicted RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 CPLX2Q6PUV4 134 aaKnown RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 CRELD2Q6UXH1 353 aaPredicted RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 ITPRIPQ8IWB1 547 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 TEX9Q8N6V9 391 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 KIAA1958Q8N8K9 716 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 SUN5Q8TC36 379 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 NUP133Q8WUM0 1156 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 CDKL2Q92772 493 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 DPF3Q92784 378 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 SNF8Q96H20 258 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 EPSTI1Q96J88 318 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 JPH2Q9BR39 696 aaPredicted RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 OSBPL10Q9BXB5 764 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 CASS4Q9NQ75 786 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 PAPOLBQ9NRJ5 636 aaKnown RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 TRMT1Q9NXH9 659 aaKnown RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 MIS18AQ9NYP9 233 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 CHPF2Q9P2E5 772 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 CFDP1Q9UEE9 299 aaPredicted RBP6.06□□□□□ -1.44
CD44-236ENST00000533222 TRAF6Q9Y4K3 522 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.06□□□□□ -1.44
CD44-236ENST00000533222 TAF6LQ9Y6J9 622 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 KIF21BO75037 1637 aa6.06□□□□□ -1.44
CD44-236ENST00000533222 B4DLN1 442 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 IDH3BO43837 385 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 TBC1D8O95759 1140 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 FOSP01100 380 aaPredicted RBP6.05□□□□□ -1.44
CD44-236ENST00000533222 MYCLP1P12525 358 aaPredicted RBP6.05□□□□□ -1.44
CD44-236ENST00000533222 PRKCAP17252 672 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 S100A1P23297 94 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 GNL1P36915 607 aaPredicted RBP6.05□□□□□ -1.44
CD44-236ENST00000533222 MVKQ03426 396 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 CHRNEQ04844 493 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 SPIDRQ14159 915 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 SMC1AQ14683 1233 aaKnown RBP6.05□□□□□ -1.44
CD44-236ENST00000533222 CBX2Q14781 532 aaPredicted RBP6.05□□□□□ -1.44
CD44-236ENST00000533222 BCL2A1Q16548 175 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 TKFCQ3LXA3 575 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 PABPC1LQ4VXU2 614 aaKnown RBP6.05□□□□□ -1.44
CD44-236ENST00000533222 CMPK2Q5EBM0 449 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 AKNAD1Q5T1N1 836 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 XP32Q5T750 250 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 HLA-DQA1Q5Y7H0 255 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 CAPRIN2Q6IMN6 1127 aaKnown RBP6.05□□□□□ -1.44
CD44-236ENST00000533222 MIS18BP1Q6P0N0 1132 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 NLRX1Q86UT6 975 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 C11orf74Q86VG3 221 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 JAMLQ86YT9 394 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 CARNMT1Q8N4J0 409 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 OXR1Q8N573 874 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 SYT2Q8N9I0 419 aaPredicted RBP6.05□□□□□ -1.44
CD44-236ENST00000533222 SPC24Q8NBT2 197 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 RCBTB1Q8NDN9 531 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 ZSWIM2Q8NEG5 633 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 NUP43Q8NFH3 380 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 RASSF8Q8NHQ8 419 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 CCDC110Q8TBZ0 833 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 USP6NLQ92738 828 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 SPDL1Q96EA4 605 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 KIRREL1Q96J84 757 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 SNX27Q96L92 541 aa6.05□□□□□ -1.44
CD44-236ENST00000533222 MMP19Q99542 508 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms