RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SHC4Q6S5L8 630 aa21.93■■□□□ 1.1
CPSF1-209ENST00000532725 GPBP1Q86WP2 473 aa21.93■■□□□ 1.1
CPSF1-209ENST00000532725 TMEM192Q8IY95 271 aa21.93■■□□□ 1.1
CPSF1-209ENST00000532725 SAMD11Q96NU1 681 aa21.93■■□□□ 1.1
CPSF1-209ENST00000532725 STK17AQ9UEE5 414 aa21.93■■□□□ 1.1
CPSF1-209ENST00000532725 MTUS1Q9ULD2 1270 aa21.93■■□□□ 1.1
CPSF1-209ENST00000532725 TTLL13PA6NNM8 815 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 CCDC169A6NNP5 214 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 ACKR2O00590 384 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 HOXA2O43364 376 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 LPXNO60711 386 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 PLS3P13797 630 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 BMPR1AP36894 532 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 GIT2Q14161 759 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 MAPK6Q16659 721 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 PAN2Q504Q3 1202 aaKnown RBP21.92■■□□□ 1.1
CPSF1-209ENST00000532725 CLLU1OSQ5K130 101 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 CCDC73Q6ZRK6 1079 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 RNF169Q8NCN4 708 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 SPIRE2Q8WWL2 714 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 CCDC51Q96ER9 411 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 TMEM117Q9H0C3 514 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 ARHGAP28Q9P2N2 729 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 KCNG1Q9UIX4 513 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 ATP6V1DQ9Y5K8 247 aa21.92■■□□□ 1.1
CPSF1-209ENST00000532725 MRPL42Q9Y6G3 142 aaKnown RBP21.92■■□□□ 1.1
CPSF1-209ENST00000532725 POU3F3P20264 500 aaPredicted RBP21.91■■□□□ 1.1
CPSF1-209ENST00000532725 ME1P48163 572 aa21.91■■□□□ 1.1
CPSF1-209ENST00000532725 CACNB1Q02641 598 aaPredicted RBP21.91■■□□□ 1.1
CPSF1-209ENST00000532725 DMP1Q13316 513 aaPredicted RBP21.91■■□□□ 1.1
CPSF1-209ENST00000532725 LRRC55Q6ZSA7 311 aa21.91■■□□□ 1.1
CPSF1-209ENST00000532725 SMG8Q8ND04 991 aaKnown RBP21.91■■□□□ 1.1
CPSF1-209ENST00000532725 LPPQ93052 612 aa21.91■■□□□ 1.1
CPSF1-209ENST00000532725 GAS2L1Q99501 681 aaPredicted RBP21.91■■□□□ 1.1
CPSF1-209ENST00000532725 REEP2Q9BRK0 252 aa21.91■■□□□ 1.1
CPSF1-209ENST00000532725 EIF2AQ9BY44 585 aaKnown RBP21.91■■□□□ 1.1
CPSF1-209ENST00000532725 TMEM134Q9H6X4 195 aa21.91■■□□□ 1.1
CPSF1-209ENST00000532725 KMT5AQ9NQR1 393 aa21.91■■□□□ 1.1
CPSF1-209ENST00000532725 TYW1Q9NV66 732 aaKnown RBP21.91■■□□□ 1.1
CPSF1-209ENST00000532725 ODF2LQ9ULJ1 636 aa21.91■■□□□ 1.1
CPSF1-209ENST00000532725 USP20Q9Y2K6 914 aa21.91■■□□□ 1.1
CPSF1-209ENST00000532725 RBM19Q9Y4C8 960 aaKnown RBP21.91■■□□□ 1.1
CPSF1-209ENST00000532725 TRANK1O15050 2925 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 MEIS3P2A8K0S8 358 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 C5orf67F2Z3F1 127 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 K7ERI5 159 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 EDN1P05305 212 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 PRKCBP05771 671 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 FOSL2P15408 326 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 ZNF131P52739 623 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 KRT85P78386 507 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 NUCB2P80303 420 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 LONRF3Q496Y0 759 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 AGMOQ6ZNB7 445 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 FBXO22Q8NEZ5 403 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 LEO1Q8WVC0 666 aaPredicted RBP21.9■■□□□ 1.1
CPSF1-209ENST00000532725 PGBD4Q96DM1 585 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 RWDD3Q9Y3V2 267 aa21.9■■□□□ 1.1
CPSF1-209ENST00000532725 CNTNAP2Q9UHC6 1331 aa21.89■■□□□ 1.1
CPSF1-209ENST00000532725 H3BNC9 293 aa21.89■■□□□ 1.09
CPSF1-209ENST00000532725 SLC16A4O15374 487 aa21.89■■□□□ 1.09
CPSF1-209ENST00000532725 OFD1O75665 1012 aa21.89■■□□□ 1.09
CPSF1-209ENST00000532725 RB1P06400 928 aa21.89■■□□□ 1.09
CPSF1-209ENST00000532725 NCLP19338 710 aaKnown RBP21.89■■□□□ 1.09
CPSF1-209ENST00000532725 PRPF4BQ13523 1007 aaKnown RBP21.89■■□□□ 1.09
CPSF1-209ENST00000532725 NT5DC1Q5TFE4 455 aa21.89■■□□□ 1.09
CPSF1-209ENST00000532725 SV2BQ7L1I2 683 aa21.89■■□□□ 1.09
CPSF1-209ENST00000532725 TAS1R3Q7RTX0 852 aa21.89■■□□□ 1.09
CPSF1-209ENST00000532725 CDR2LQ86X02 465 aaPredicted RBP21.89■■□□□ 1.09
CPSF1-209ENST00000532725 PDILTQ8N807 584 aa21.89■■□□□ 1.09
CPSF1-209ENST00000532725 CNNM3Q8NE01 707 aa21.89■■□□□ 1.09
CPSF1-209ENST00000532725 HELQQ8TDG4 1101 aa21.89■■□□□ 1.09
CPSF1-209ENST00000532725 RNF39Q9H2S5 420 aa21.89■■□□□ 1.09
CPSF1-209ENST00000532725 CWH43Q9H720 699 aa21.89■■□□□ 1.09
CPSF1-209ENST00000532725 IPPQ9Y573 584 aa21.89■■□□□ 1.09
CPSF1-209ENST00000532725 FNDC1Q4ZHG4 1894 aaPredicted RBP21.88■■□□□ 1.09
CPSF1-209ENST00000532725 LIG1P18858 919 aa21.88■■□□□ 1.09
CPSF1-209ENST00000532725 IGFBP4P22692 258 aa21.88■■□□□ 1.09
CPSF1-209ENST00000532725 STAT6P42226 847 aa21.88■■□□□ 1.09
CPSF1-209ENST00000532725 SMTNP53814 917 aa21.88■■□□□ 1.09
CPSF1-209ENST00000532725 E2F4Q16254 413 aa21.88■■□□□ 1.09
CPSF1-209ENST00000532725 RESP18Q5W5W9 173 aa21.88■■□□□ 1.09
CPSF1-209ENST00000532725 SLC27A1Q6PCB7 646 aa21.88■■□□□ 1.09
CPSF1-209ENST00000532725 ABI1Q8IZP0 508 aa21.88■■□□□ 1.09
CPSF1-209ENST00000532725 TMEM161BQ8NDZ6 487 aa21.88■■□□□ 1.09
CPSF1-209ENST00000532725 PLVAPQ9BX97 442 aa21.88■■□□□ 1.09
CPSF1-209ENST00000532725 LARSQ9P2J5 1176 aaKnown RBP21.88■■□□□ 1.09
CPSF1-209ENST00000532725 COL6A3P12111 3177 aa21.88■■□□□ 1.09
CPSF1-209ENST00000532725 MYMKA6NI61 221 aa21.87■■□□□ 1.09
CPSF1-209ENST00000532725 KRT18P05783 430 aaKnown RBP21.87■■□□□ 1.09
CPSF1-209ENST00000532725 GDPD5Q8WTR4 605 aa21.87■■□□□ 1.09
CPSF1-209ENST00000532725 DDX12PQ92771 950 aa21.87■■□□□ 1.09
CPSF1-209ENST00000532725 KCNN1Q92952 543 aa21.87■■□□□ 1.09
CPSF1-209ENST00000532725 SPATA32Q96LK8 384 aa21.87■■□□□ 1.09
CPSF1-209ENST00000532725 PDZD7Q9H5P4 517 aa21.87■■□□□ 1.09
CPSF1-209ENST00000532725 PARVGQ9HBI0 331 aa21.87■■□□□ 1.09
CPSF1-209ENST00000532725 HCSTQ9UBK5 93 aa21.87■■□□□ 1.09
CPSF1-209ENST00000532725 HES2Q9Y543 173 aa21.87■■□□□ 1.09
CPSF1-209ENST00000532725 MTCH2Q9Y6C9 303 aa21.87■■□□□ 1.09
CPSF1-209ENST00000532725 N4BP3O15049 544 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms