RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 FZD8Q9H461 694 aa16.61■□□□□ 0.25
CPSF1-208ENST00000532560 CFAP45Q9UL16 551 aa16.61■□□□□ 0.25
CPSF1-208ENST00000532560 PCDHB2Q9Y5E7 798 aa16.61■□□□□ 0.25
CPSF1-208ENST00000532560 B4GALT5O43286 388 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 CUTAO60888 179 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 CTNNB1P35222 781 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 BMPR1AP36894 532 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 NPTX2P47972 431 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 DNM1Q05193 864 aaKnown RBP16.6■□□□□ 0.25
CPSF1-208ENST00000532560 MCM6Q14566 821 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 MAPK6Q16659 721 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 ARSHQ5FYA8 562 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 CLLU1OSQ5K130 101 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 GPBP1Q86WP2 473 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 ABI1Q8IZP0 508 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 LRRC43Q8N309 656 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 RNF169Q8NCN4 708 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 CPB2Q96IY4 423 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 KIFC3Q9BVG8 833 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 PLVAPQ9BX97 442 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 POLD4Q9HCU8 107 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 ARHGAP28Q9P2N2 729 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 ODF2LQ9ULJ1 636 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 PHLPP2Q6ZVD8 1323 aa16.6■□□□□ 0.25
CPSF1-208ENST00000532560 RFXAPO00287 272 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 PRKCBP05771 671 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 RB1P06400 928 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 PLS3P13797 630 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 DDIT3P35638 169 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 PEX3P56589 373 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 RAD51AP2Q09MP3 1159 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 RRAGBQ5VZM2 374 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 SLC27A1Q6PCB7 646 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 CCDC73Q6ZRK6 1079 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 MRPL10Q7Z7H8 261 aaKnown RBP16.59■□□□□ 0.25
CPSF1-208ENST00000532560 CNNM3Q8NE01 707 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 MAFAQ8NHW3 353 aaPredicted RBP16.59■□□□□ 0.25
CPSF1-208ENST00000532560 SPIRE2Q8WWL2 714 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 PGBD4Q96DM1 585 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 REEP2Q9BRK0 252 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 C11orf84Q9BUA3 381 aaPredicted RBP16.59■□□□□ 0.25
CPSF1-208ENST00000532560 MRPL9Q9BYD2 267 aaKnown RBP16.59■□□□□ 0.25
CPSF1-208ENST00000532560 KCNG1Q9UIX4 513 aa16.59■□□□□ 0.25
CPSF1-208ENST00000532560 TRANK1O15050 2925 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 A0A1B0GUA9 196 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 CCDC169A6NNP5 214 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 H3BNC9 293 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 ACKR2O00590 384 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 N4BP3O15049 544 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 GTPBP6O43824 516 aaPredicted RBP16.58■□□□□ 0.24
CPSF1-208ENST00000532560 NCLP19338 710 aaKnown RBP16.58■□□□□ 0.24
CPSF1-208ENST00000532560 IGFBP4P22692 258 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 ZNF131P52739 623 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 PRPF4BQ13523 1007 aaKnown RBP16.58■□□□□ 0.24
CPSF1-208ENST00000532560 NAALADL2Q58DX5 795 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 AXDND1Q5T1B0 1012 aaPredicted RBP16.58■□□□□ 0.24
CPSF1-208ENST00000532560 SMG8Q8ND04 991 aaKnown RBP16.58■□□□□ 0.24
CPSF1-208ENST00000532560 HELQQ8TDG4 1101 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 LPPQ93052 612 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 P2RX5Q93086 422 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 NTPCRQ9BSD7 190 aaKnown RBP16.58■□□□□ 0.24
CPSF1-208ENST00000532560 EIF2AQ9BY44 585 aaKnown RBP16.58■□□□□ 0.24
CPSF1-208ENST00000532560 TMEM134Q9H6X4 195 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 KMT5AQ9NQR1 393 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 LMCD1Q9NZU5 365 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 IPPQ9Y573 584 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 ATP6V1DQ9Y5K8 247 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 MTCH2Q9Y6C9 303 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 MYH11P35749 1972 aa16.58■□□□□ 0.24
CPSF1-208ENST00000532560 ZMYM2Q9UBW7 1377 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 A0A087X0B3 334 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 NPHP3-ACAD11A0A0J9YXS1 232 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 MEIS3P2A8K0S8 358 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 EDN1P05305 212 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 KRT85P78386 507 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 GPM6BQ13491 265 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 DHX8Q14562 1220 aaKnown RBP16.57■□□□□ 0.24
CPSF1-208ENST00000532560 GLB1LQ6UWU2 654 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 KCNN1Q92952 543 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 TRIM6Q9C030 488 aaPredicted RBP16.57■□□□□ 0.24
CPSF1-208ENST00000532560 PDZD7Q9H5P4 517 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 CWH43Q9H720 699 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 AAASQ9NRG9 546 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 LARSQ9P2J5 1176 aaKnown RBP16.57■□□□□ 0.24
CPSF1-208ENST00000532560 HCSTQ9UBK5 93 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 RCOR1Q9UKL0 485 aa16.57■□□□□ 0.24
CPSF1-208ENST00000532560 A0A0C4DFX4 3053 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 TTLL13PA6NNM8 815 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 SFI1A8K8P3 1242 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 H0YCG3 227 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 K7ERI5 159 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 LAG3P18627 525 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 STAT6P42226 847 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 ME1P48163 572 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 SMTNP53814 917 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 CACNB1Q02641 598 aaPredicted RBP16.56■□□□□ 0.24
CPSF1-208ENST00000532560 GIT2Q14161 759 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 CSPP1Q1MSJ5 1256 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 SHC4Q6S5L8 630 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 AGMOQ6ZNB7 445 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms