RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 BRWD3Q6RI45 1802 aa20.79■□□□□ 0.92
VPS28-213ENST00000530983 KRT13P13646 458 aa20.79■□□□□ 0.92
VPS28-213ENST00000530983 MARCKSL1P49006 195 aa20.79■□□□□ 0.92
VPS28-213ENST00000530983 EIF3BP55884 814 aaKnown RBP20.79■□□□□ 0.92
VPS28-213ENST00000530983 QPCTQ16769 361 aa20.79■□□□□ 0.92
VPS28-213ENST00000530983 INTS8Q75QN2 995 aaKnown RBP20.79■□□□□ 0.92
VPS28-213ENST00000530983 RAPGEF5Q92565 580 aa20.79■□□□□ 0.92
VPS28-213ENST00000530983 EHMT1Q9H9B1 1298 aa20.79■□□□□ 0.92
VPS28-213ENST00000530983 GOPCQ9HD26 462 aa20.79■□□□□ 0.92
VPS28-213ENST00000530983 ZNF219Q9P2Y4 722 aaPredicted RBP20.79■□□□□ 0.92
VPS28-213ENST00000530983 DDX20Q9UHI6 824 aaKnown RBP20.79■□□□□ 0.92
VPS28-213ENST00000530983 HERC5Q9UII4 1024 aaKnown RBP20.79■□□□□ 0.92
VPS28-213ENST00000530983 KIAA0391O15091 583 aaKnown RBP20.78■□□□□ 0.92
VPS28-213ENST00000530983 IFFO1Q0D2I5 559 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 CLUL1Q15846 466 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 EPC2Q52LR7 807 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 PADI6Q6TGC4 694 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 ZDHHC24Q6UX98 284 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 MAEAQ7L5Y9 396 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 C18orf8Q96DM3 657 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 CTTNBP2NLQ9P2B4 639 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 MRPL11Q9Y3B7 192 aaKnown RBP20.78■□□□□ 0.92
VPS28-213ENST00000530983 SYNGAP1Q96PV0 1343 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 DDX39AO00148 427 aaKnown RBP20.78■□□□□ 0.92
VPS28-213ENST00000530983 SHBGP04278 402 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 VAMP7P51809 220 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 TCEAL1Q15170 157 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 AOC3Q16853 763 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 C1orf220Q5T0J3 134 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 RNF187Q5TA31 235 aaPredicted RBP20.78■□□□□ 0.92
VPS28-213ENST00000530983 FLAD1Q8NFF5 587 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 CBWD1Q9BRT8 395 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 SNX24Q9Y343 169 aa20.78■□□□□ 0.92
VPS28-213ENST00000530983 MIF4GDA9UHW6 222 aaKnown RBP20.77■□□□□ 0.92
VPS28-213ENST00000530983 CAND2O75155 1236 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 NUDT17P0C025 328 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 USP8P40818 1118 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 PTGIRP43119 386 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 GCLMP48507 274 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 DRG2P55039 364 aaKnown RBP20.77■□□□□ 0.92
VPS28-213ENST00000530983 PLTPP55058 493 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 RPUSD2Q8IZ73 545 aaKnown RBP20.77■□□□□ 0.92
VPS28-213ENST00000530983 ZDHHC14Q8IZN3 488 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 FBXO25Q8TCJ0 367 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 RIT2Q99578 217 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 ZSWIM1Q9BR11 485 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.77■□□□□ 0.92
VPS28-213ENST00000530983 PFASO15067 1338 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 BACH1O14867 736 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 PHF2O75151 1096 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 ITGB5P18084 799 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 ZNF746Q6NUN9 644 aaPredicted RBP20.77■□□□□ 0.92
VPS28-213ENST00000530983 PRELID2Q8N945 189 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 ZSWIM2Q8NEG5 633 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 CHURC1Q8WUH1 139 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 TMEM174Q8WUU8 243 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 PABPC3Q9H361 631 aaKnown RBP20.77■□□□□ 0.92
VPS28-213ENST00000530983 GRHL1Q9NZI5 618 aa20.77■□□□□ 0.92
VPS28-213ENST00000530983 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.77■□□□□ 0.92
VPS28-213ENST00000530983 CHORDC1Q9UHD1 332 aaPredicted RBP20.77■□□□□ 0.92
VPS28-213ENST00000530983 C5orf60A6NFR6 353 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 TCP10L2B9ZVM9 353 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 PMS2P54278 862 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 GPC5P78333 572 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 UBL4BQ8N7F7 174 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 PLEKHO2Q8TD55 490 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 KAT5Q92993 513 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 MXRA8Q9BRK3 442 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 TMEM206Q9H813 350 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 LARSQ9P2J5 1176 aaKnown RBP20.76■□□□□ 0.91
VPS28-213ENST00000530983 ZBTB21Q9ULJ3 1066 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 H0YHG0 523 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 P4HA2O15460 535 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 PEX5P50542 639 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 ACTN3Q08043 901 aaPredicted RBP20.76■□□□□ 0.91
VPS28-213ENST00000530983 CETN1Q12798 172 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 SAMD1Q6SPF0 538 aaPredicted RBP20.76■□□□□ 0.91
VPS28-213ENST00000530983 NEK9Q8TD19 979 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 AKT1S1Q96B36 256 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 RNF25Q96BH1 459 aaPredicted RBP20.76■□□□□ 0.91
VPS28-213ENST00000530983 PCDHB18PQ96TA0 734 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 CXorf56Q9H5V9 222 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 VCPKMTQ9H867 229 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 PKD2L1Q9P0L9 805 aa20.76■□□□□ 0.91
VPS28-213ENST00000530983 TMEM110-MUSTN1A8MSY1 372 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 CTNNA2P26232 953 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 CHRNA3P32297 505 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 HSPA1LP34931 641 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 ZYXQ15942 572 aaKnown RBP20.75■□□□□ 0.91
VPS28-213ENST00000530983 TTC27Q6P3X3 843 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 LDHDQ86WU2 507 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 C12orf56Q8IXR9 622 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 FBXO28Q9NVF7 368 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 PCYOX1Q9UHG3 505 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 RASAL2Q9UJF2 1139 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 PNMA2Q9UL42 364 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 RPTORQ8N122 1335 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 RTN2O75298 545 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 CHRNB2P17787 502 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 COMTP21964 271 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms