RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 NR3C1P04150 777 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 FGFR4P22455 802 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 RPL13P26373 211 aaKnown RBP15.3■□□□□ 0.04
USP48-213ENST00000529637 RPA1P27694 616 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 RBM26Q5T8P6 1007 aaKnown RBP15.3■□□□□ 0.04
USP48-213ENST00000529637 ZDHHC24Q6UX98 284 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 PPP4R3CPQ6ZMV5 832 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 TMEM179Q6ZVK1 233 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 OTUD6AQ7L8S5 288 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 SLC17A8Q8NDX2 589 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 NEK9Q8TD19 979 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 GCNT4Q9P109 453 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 LTBP4Q8N2S1 1624 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 RPTORQ8N122 1335 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 MSH4O15457 936 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 MAP3K13O43283 966 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 EDRF1Q3B7T1 1238 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 SLC27A3Q5K4L6 730 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 DENND2CQ68D51 928 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 DUPD1Q68J44 220 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 KSR1Q8IVT5 923 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 ETNPPLQ8TBG4 499 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 CCHCR1Q8TD31 782 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 PGM2Q96G03 612 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 ZDHHC15Q96MV8 337 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 NUDT17P0C025 328 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 SPATA31C1P0DKV0 1188 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 HOXA7P31268 230 aaPredicted RBP15.3■□□□□ 0.04
USP48-213ENST00000529637 DR1Q01658 176 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 MKRN4PQ13434 485 aaPredicted RBP15.3■□□□□ 0.04
USP48-213ENST00000529637 GALNTL6Q49A17 601 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 SH3BP5LQ7L8J4 393 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 SLFN11Q7Z7L1 901 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 VPS36Q86VN1 386 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 FITM2Q8N6M3 262 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 CEP120Q8N960 986 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 HES6Q96HZ4 224 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 EIF2AK1Q9BQI3 630 aaKnown RBP15.3■□□□□ 0.04
USP48-213ENST00000529637 ERP44Q9BS26 406 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 PKD2L1Q9P0L9 805 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 TAF1LQ8IZX4 1826 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 PITPNM2Q9BZ72 1349 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 CNGA2Q16280 664 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 TRIM68Q6AZZ1 485 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 PODNQ7Z5L7 613 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 NLGN1Q8N2Q7 840 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 SYT2Q8N9I0 419 aaPredicted RBP15.29■□□□□ 0.04
USP48-213ENST00000529637 RDH13Q8NBN7 331 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 U2AF1L4Q8WU68 220 aaKnown RBP15.29■□□□□ 0.04
USP48-213ENST00000529637 CSRNP1Q96S65 589 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 TRPC5Q9UL62 973 aaPredicted RBP15.29■□□□□ 0.04
USP48-213ENST00000529637 NHSQ6T4R5 1651 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 TCP11X1B4DZS4 312 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 EML1O00423 815 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 ZBTB39O15060 712 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 GFPT2O94808 682 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 CCND1P24385 295 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 CALRP27797 417 aaKnown RBP15.29■□□□□ 0.04
USP48-213ENST00000529637 NMT1P30419 496 aaKnown RBP15.29■□□□□ 0.04
USP48-213ENST00000529637 CYP2J2P51589 502 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 RNASELQ05823 741 aaKnown RBP15.29■□□□□ 0.04
USP48-213ENST00000529637 BLMHQ13867 455 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 ZC2HC1CQ53FD0 456 aaPredicted RBP15.29■□□□□ 0.04
USP48-213ENST00000529637 ARHGAP27Q6ZUM4 889 aa15.29■□□□□ 0.04
USP48-213ENST00000529637 SUCLA2Q9P2R7 463 aaPredicted RBP15.29■□□□□ 0.04
USP48-213ENST00000529637 NKX1-2Q9UD57 310 aaPredicted RBP15.29■□□□□ 0.04
USP48-213ENST00000529637 ZMYND8Q9ULU4 1186 aaPredicted RBP15.29■□□□□ 0.04
USP48-213ENST00000529637 ECE2O60344 883 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 FOSP01100 380 aaPredicted RBP15.28■□□□□ 0.04
USP48-213ENST00000529637 PON1P27169 355 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 MSH2P43246 934 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 COPS2P61201 443 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 BNIP1Q12981 228 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 CNKSR1Q969H4 720 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 QTRT2Q9H974 415 aaKnown RBP15.28■□□□□ 0.04
USP48-213ENST00000529637 CORO1CQ9ULV4 474 aaPredicted RBP15.28■□□□□ 0.04
USP48-213ENST00000529637 DAAM1Q9Y4D1 1078 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 IGSF9BQ9UPX0 1349 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 CYP3A7-CYP3A51PA0A087WV96 503 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 CCDC169A6NNP5 214 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 DDX3XO00571 662 aaKnown RBP eCLIP15.28■□□□□ 0.049e-15■■■□□ 16.6
USP48-213ENST00000529637 FLOT1O75955 427 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 OAS1P00973 400 aaKnown RBP15.28■□□□□ 0.04
USP48-213ENST00000529637 CYP3A7P24462 503 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 FRMD5Q7Z6J6 570 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 SIAH1Q8IUQ4 282 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 C18orf8Q96DM3 657 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 RMDN2Q96LZ7 410 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 TCP10L2B9ZVM9 353 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 DDX39AO00148 427 aaKnown RBP15.28■□□□□ 0.04
USP48-213ENST00000529637 TUBP50607 506 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 PTENP60484 403 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 MAP2K1Q02750 393 aaPredicted RBP15.28■□□□□ 0.04
USP48-213ENST00000529637 SPIRE1Q08AE8 756 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 MASTLQ96GX5 879 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 FAM20AQ96MK3 541 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 SH3GL3Q99963 347 aa15.28■□□□□ 0.04
USP48-213ENST00000529637 USP15Q9Y4E8 981 aaPredicted RBP15.28■□□□□ 0.04
USP48-213ENST00000529637 CLRN2A0PK11 232 aa15.27■□□□□ 0.04
USP48-213ENST00000529637 KIAA0391O15091 583 aaKnown RBP15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms