RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 STK3Q13188 491 aa26.38■■□□□ 1.81
CPSF1-202ENST00000527827 LETM2Q2VYF4 491 aa26.38■■□□□ 1.81
CPSF1-202ENST00000527827 SRGAP1Q7Z6B7 1085 aa26.38■■□□□ 1.81
CPSF1-202ENST00000527827 PPFIBP1Q86W92 1011 aa26.38■■□□□ 1.81
CPSF1-202ENST00000527827 URGCPQ8TCY9 931 aa26.38■■□□□ 1.81
CPSF1-202ENST00000527827 SLC7A3Q8WY07 619 aa26.38■■□□□ 1.81
CPSF1-202ENST00000527827 TMEM143Q96AN5 459 aa26.38■■□□□ 1.81
CPSF1-202ENST00000527827 CEP170P1Q96L14 293 aa26.38■■□□□ 1.81
CPSF1-202ENST00000527827 FAM20AQ96MK3 541 aa26.38■■□□□ 1.81
CPSF1-202ENST00000527827 KLHL5Q96PQ7 755 aa26.38■■□□□ 1.81
CPSF1-202ENST00000527827 CYP46A1Q9Y6A2 500 aa26.38■■□□□ 1.81
CPSF1-202ENST00000527827 ARID2Q68CP9 1835 aa26.37■■□□□ 1.81
CPSF1-202ENST00000527827 LILRB3O75022 631 aa26.37■■□□□ 1.81
CPSF1-202ENST00000527827 SRGAP2CP0DJJ0 459 aa26.37■■□□□ 1.81
CPSF1-202ENST00000527827 CLCN4P51793 760 aa26.37■■□□□ 1.81
CPSF1-202ENST00000527827 GPR149Q86SP6 731 aa26.37■■□□□ 1.81
CPSF1-202ENST00000527827 SFXN1Q9H9B4 322 aa26.37■■□□□ 1.81
CPSF1-202ENST00000527827 RSAD1Q9HA92 442 aa26.37■■□□□ 1.81
CPSF1-202ENST00000527827 CFAP54Q96N23 3096 aa26.36■■□□□ 1.81
CPSF1-202ENST00000527827 SSBP05455 408 aaKnown RBP eCLIP26.36■■□□□ 1.81
CPSF1-202ENST00000527827 P4HBP07237 508 aaKnown RBP26.36■■□□□ 1.81
CPSF1-202ENST00000527827 CNPP09543 421 aaKnown RBP26.36■■□□□ 1.81
CPSF1-202ENST00000527827 LAMTOR4Q0VGL1 99 aa26.36■■□□□ 1.81
CPSF1-202ENST00000527827 PSPC1Q8WXF1 523 aaKnown RBP26.36■■□□□ 1.81
CPSF1-202ENST00000527827 TMEM175Q9BSA9 504 aa26.36■■□□□ 1.81
CPSF1-202ENST00000527827 PHF20Q9BVI0 1012 aa26.36■■□□□ 1.81
CPSF1-202ENST00000527827 SLKQ9H2G2 1235 aaPredicted RBP26.36■■□□□ 1.81
CPSF1-202ENST00000527827 PPME1Q9Y570 386 aa26.36■■□□□ 1.81
CPSF1-202ENST00000527827 CNTNAP2Q9UHC6 1331 aa26.36■■□□□ 1.81
CPSF1-202ENST00000527827 PROB1E7EW31 1015 aa26.35■■□□□ 1.81
CPSF1-202ENST00000527827 DKC1O60832 514 aaKnown RBP eCLIP26.35■■□□□ 1.81
CPSF1-202ENST00000527827 RFC5P40937 340 aa26.35■■□□□ 1.81
CPSF1-202ENST00000527827 ASTLQ6HA08 431 aaPredicted RBP26.35■■□□□ 1.81
CPSF1-202ENST00000527827 PPP4R3AQ6IN85 833 aa26.35■■□□□ 1.81
CPSF1-202ENST00000527827 CPLX2Q6PUV4 134 aaKnown RBP26.35■■□□□ 1.81
CPSF1-202ENST00000527827 NEK8Q86SG6 692 aa26.35■■□□□ 1.81
CPSF1-202ENST00000527827 EXOC8Q8IYI6 725 aa26.35■■□□□ 1.81
CPSF1-202ENST00000527827 HAS1Q92839 578 aa26.35■■□□□ 1.81
CPSF1-202ENST00000527827 EMILIN2Q9BXX0 1053 aa26.35■■□□□ 1.81
CPSF1-202ENST00000527827 TM6SF1Q9BZW5 370 aa26.35■■□□□ 1.81
CPSF1-202ENST00000527827 BMP2KQ9NSY1 1161 aaPredicted RBP26.35■■□□□ 1.81
CPSF1-202ENST00000527827 KANSL3Q9P2N6 904 aa26.35■■□□□ 1.81
CPSF1-202ENST00000527827 STK39Q9UEW8 545 aa26.35■■□□□ 1.81
CPSF1-202ENST00000527827 FAN1Q9Y2M0 1017 aa26.35■■□□□ 1.81
CPSF1-202ENST00000527827 NRP1O14786 923 aa26.34■■□□□ 1.81
CPSF1-202ENST00000527827 EPB41L2O43491 1005 aaKnown RBP26.34■■□□□ 1.81
CPSF1-202ENST00000527827 POMCP01189 267 aa26.34■■□□□ 1.81
CPSF1-202ENST00000527827 ALDH2P05091 517 aa26.34■■□□□ 1.81
CPSF1-202ENST00000527827 KLRC2P26717 231 aa26.34■■□□□ 1.81
CPSF1-202ENST00000527827 C4orf19Q8IY42 314 aa26.34■■□□□ 1.81
CPSF1-202ENST00000527827 CCDC194A0A1B0GVG4 234 aa26.33■■□□□ 1.81
CPSF1-202ENST00000527827 GCFC2P16383 781 aaKnown RBP26.33■■□□□ 1.81
CPSF1-202ENST00000527827 NCLP19338 710 aaKnown RBP26.33■■□□□ 1.81
CPSF1-202ENST00000527827 EPHA7Q15375 998 aa26.33■■□□□ 1.81
CPSF1-202ENST00000527827 CCDC149Q6ZUS6 474 aa26.33■■□□□ 1.81
CPSF1-202ENST00000527827 SMG8Q8ND04 991 aaKnown RBP26.33■■□□□ 1.81
CPSF1-202ENST00000527827 FAM193BQ96PV7 902 aaPredicted RBP26.33■■□□□ 1.81
CPSF1-202ENST00000527827 LXNQ9BS40 222 aa26.33■■□□□ 1.81
CPSF1-202ENST00000527827 MARCH5Q9NX47 278 aa26.33■■□□□ 1.81
CPSF1-202ENST00000527827 RGL1Q9NZL6 768 aa26.33■■□□□ 1.81
CPSF1-202ENST00000527827 MYO15AQ9UKN7 3530 aa26.33■■□□□ 1.81
CPSF1-202ENST00000527827 ZBTB39O15060 712 aa26.32■■□□□ 1.8
CPSF1-202ENST00000527827 YWHABP31946 246 aaKnown RBP26.32■■□□□ 1.8
CPSF1-202ENST00000527827 EMC2Q15006 297 aa26.32■■□□□ 1.8
CPSF1-202ENST00000527827 OTOP3Q7RTS5 596 aa26.32■■□□□ 1.8
CPSF1-202ENST00000527827 FERMT3Q86UX7 667 aa26.32■■□□□ 1.8
CPSF1-202ENST00000527827 RNF149Q8NC42 400 aa26.32■■□□□ 1.8
CPSF1-202ENST00000527827 ACSF2Q96CM8 615 aaPredicted RBP26.32■■□□□ 1.8
CPSF1-202ENST00000527827 MRPL17Q9NRX2 175 aaKnown RBP26.32■■□□□ 1.8
CPSF1-202ENST00000527827 GJB4Q9NTQ9 266 aa26.32■■□□□ 1.8
CPSF1-202ENST00000527827 PTPRZ1P23471 2315 aaPredicted RBP26.31■■□□□ 1.8
CPSF1-202ENST00000527827 SPDYE4A6NLX3 237 aa26.31■■□□□ 1.8
CPSF1-202ENST00000527827 TBX3O15119 743 aa26.31■■□□□ 1.8
CPSF1-202ENST00000527827 GAS2O43903 313 aaKnown RBP26.31■■□□□ 1.8
CPSF1-202ENST00000527827 CCNT1O60563 726 aaKnown RBP26.31■■□□□ 1.8
CPSF1-202ENST00000527827 SOD2P04179 222 aa26.31■■□□□ 1.8
CPSF1-202ENST00000527827 CLCN5P51795 746 aa26.31■■□□□ 1.8
CPSF1-202ENST00000527827 SPIRE1Q08AE8 756 aa26.31■■□□□ 1.8
CPSF1-202ENST00000527827 CWF19L1Q69YN2 538 aaKnown RBP26.31■■□□□ 1.8
CPSF1-202ENST00000527827 TAS1R1Q7RTX1 841 aa26.31■■□□□ 1.8
CPSF1-202ENST00000527827 COLGALT2Q8IYK4 626 aa26.31■■□□□ 1.8
CPSF1-202ENST00000527827 OXER1Q8TDS5 423 aa26.31■■□□□ 1.8
CPSF1-202ENST00000527827 TCP11Q8WWU5 503 aa26.31■■□□□ 1.8
CPSF1-202ENST00000527827 DYDC2Q96IM9 177 aa26.31■■□□□ 1.8
CPSF1-202ENST00000527827 MFSD1Q9H3U5 465 aa26.31■■□□□ 1.8
CPSF1-202ENST00000527827 TDRD15B5MCY1 1934 aaKnown RBP26.31■■□□□ 1.8
CPSF1-202ENST00000527827 C2CD2LO14523 706 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 ASAP2O43150 1006 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 EFEMP2O95967 443 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 NBL1P41271 181 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 SCRN1Q12765 414 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 XKR9Q5GH70 373 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 C15orf39Q6ZRI6 1047 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 PIK3AP1Q6ZUJ8 805 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 OTUD6AQ7L8S5 288 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 ASCL5Q7RTU5 278 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 POTEDQ86YR6 584 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 HERC2P3Q9BVR0 1158 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 EIF2AQ9BY44 585 aaKnown RBP26.3■■□□□ 1.8
CPSF1-202ENST00000527827 RNF39Q9H2S5 420 aa26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms