RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 SLC30A10Q6XR72 485 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 NOP9Q86U38 636 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 FAM126BQ8IXS8 530 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 CCDC144CPQ8IYA2 1237 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 PDCD7Q8N8D1 485 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 ARNTL2Q8WYA1 636 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 TAAR1Q96RJ0 339 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 GPR20Q99678 358 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 FTHL17Q9BXU8 183 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 TOMM22Q9NS69 142 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 C1orf112Q9NSG2 853 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 CUEDC1Q9NWM3 386 aaPredicted RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 CGNQ9P2M7 1197 aaKnown RBP3.19□□□□□ -1.9
MCF2-208ENST00000519895 TCEAL9Q9UHQ7 104 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 MAFFQ9ULX9 164 aa3.19□□□□□ -1.9
MCF2-208ENST00000519895 ATG2AQ2TAZ0 1938 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 UBE4BO95155 1302 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 UBR5O95071 2799 aaPredicted RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 SPTA1P02549 2419 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 WDR64B1ANS9 1081 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 KIAA0391O15091 583 aaKnown RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 LONP1P36776 959 aaKnown RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 IRX6P78412 446 aaPredicted RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 APOBRQ0VD83 1088 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 ST3GAL1Q11201 340 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 ECM1Q16610 540 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 CCDC144BQ3MJ40 725 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 TMEM164Q5U3C3 297 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 TLK2Q86UE8 772 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 SERINC5Q86VE9 423 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 ZC3H18Q86VM9 953 aaKnown RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 NPAS4Q8IUM7 802 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 C4orf32Q8N8J7 132 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 CNNM3Q8NE01 707 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 ATP8B4Q8TF62 1192 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 TCP11Q8WWU5 503 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 ATP6V0A1Q93050 837 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 FAXDC2Q96IV6 333 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 LRIG1Q96JA1 1093 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 TGS1Q96RS0 853 aaKnown RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 CEP89Q96ST8 783 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 C16orf70Q9BSU1 422 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 PAGR1Q9BTK6 254 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 TEKT3Q9BXF9 490 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 BRINP2Q9C0B6 783 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 CCSER1Q9C0I3 900 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 MFSD1Q9H3U5 465 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 XPNPEP3Q9NQH7 507 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 COL20A1Q9P218 1284 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 ORC3Q9UBD5 711 aaPredicted RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 SEPT3Q9UH03 358 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 GTF2IRD1Q9UHL9 959 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 ATP6V1DQ9Y5K8 247 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 TAF6LQ9Y6J9 622 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 V9GY48 417 aaPredicted RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 FRMPD2Q68DX3 1309 aaPredicted RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 A0A1W2PQ45 241 aaPredicted RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 A0A1W2PQY0 241 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 PTPDC1A2A3K4 754 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 EDIL3O43854 480 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 AP1G2O75843 785 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 OATP04181 439 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 NPR3P17342 541 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 PTMSP20962 102 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 UBA1P22314 1058 aaKnown RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 SERPINB4P48594 390 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 PSEN2P49810 448 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 ATP2C1P98194 919 aaPredicted RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 MGAT3Q09327 533 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 LY6DQ14210 128 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 BECN1Q14457 450 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 NFIL3Q16649 462 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 XKR3Q5GH77 459 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 HAUS3Q68CZ6 603 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 RSPH3Q86UC2 560 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 NOSTRINQ8IVI9 506 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 PLPP6Q8IY26 295 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 IGSF22Q8N9C0 903 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 TMEM87AQ8NBN3 555 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 ERMNQ8TAM6 284 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 TMX3Q96JJ7 454 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 GLT1D1Q96MS3 346 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 NUP88Q99567 741 aaPredicted RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 ALG1Q9BT22 464 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 NT5C3AQ9H0P0 336 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 SENP2Q9HC62 589 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 NRBP2Q9NSY0 501 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 ERAP1Q9NZ08 941 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 SLC9A2Q9UBY0 812 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 FZD1Q9UP38 647 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 PCDHA10Q9Y5I2 948 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 ABHD14A-ACY1A0A1B0GW23 586 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 SOWAHDA6NJG2 315 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 MARCH6O60337 910 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 STBD1O95210 358 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 P4HBP07237 508 aaKnown RBP3.18□□□□□ -1.9
MCF2-208ENST00000519895 PPP1R2P41236 205 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 NEK4P51957 841 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 NLRP5P59047 1200 aa3.18□□□□□ -1.9
MCF2-208ENST00000519895 PSMC5P62195 406 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms