RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 KCNJ1P48048 391 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 BBS9Q3SYG4 887 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 CEP55Q53EZ4 464 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 MIGA2Q7L4E1 593 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 TRPM8Q7Z2W7 1104 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 SPATA21Q7Z572 469 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 PASD1Q8IV76 773 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9□□□□□ -0.97
LIMCH1-216ENST00000512820 THAP2Q9H0W7 228 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 PABPC3Q9H361 631 aaKnown RBP9□□□□□ -0.97
LIMCH1-216ENST00000512820 CHORDC1Q9UHD1 332 aaPredicted RBP9□□□□□ -0.97
LIMCH1-216ENST00000512820 TTC7AQ9ULT0 858 aaPredicted RBP9□□□□□ -0.97
LIMCH1-216ENST00000512820 TRPC6Q9Y210 931 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 NRXN3Q9Y4C0 1643 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 H7C0C1 242 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 NOP56O00567 594 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 ITGA4P13612 1032 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 NPR1P16066 1061 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 ATP5OP48047 213 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 GIT2Q14161 759 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 RC3H1Q5TC82 1133 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 PPP1R2P3Q6NXS1 205 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 TRMT10CQ7L0Y3 403 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 KCNK18Q7Z418 384 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 HAUS6Q7Z4H7 955 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 SDCCAG8Q86SQ7 713 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 C4orf32Q8N8J7 132 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 PYROXD1Q8WU10 500 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 SGSM3Q96HU1 749 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 MKNK1Q9BUB5 465 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 RTFDC1Q9BY42 306 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 VCPKMTQ9H867 229 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 SUGT1Q9Y2Z0 365 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 USP15Q9Y4E8 981 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 SCINQ9Y6U3 715 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 AKAP3O75969 853 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 NDUFB10O96000 172 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 TNNC2P02585 160 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 PLCB4Q15147 1175 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 HP1BP3Q5SSJ5 553 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 CYB5D1Q6P9G0 228 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 APTXQ7Z2E3 356 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 GLIS3Q8NEA6 775 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 KCNV2Q8TDN2 545 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 FBXO41Q8TF61 875 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 RUSC1Q9BVN2 902 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 ARL2BPQ9Y2Y0 163 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 H0Y3Z8 333 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 TXNDC9O14530 226 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 EIF3DO15371 548 aaKnown RBP eCLIP8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 ATP5HO75947 161 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 TJP3O95049 919 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 QARSP47897 775 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 BASP1P80723 227 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 NR1H3Q13133 447 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 MAPK7Q13164 816 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 BSPRYQ5W0U4 402 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 BARGINQ6ZT62 677 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 PDCD7Q8N8D1 485 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 SLC30A5Q8TAD4 765 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 LRRC37BQ96QE4 947 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 OSGEPQ9NPF4 335 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 NYAP2Q9P242 653 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 BCL9O00512 1426 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 DENND3A2RUS2 1198 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 CAND2O75155 1236 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 CD58P19256 250 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 ELF1P32519 619 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 MTMR1Q13613 665 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 RCN2Q14257 317 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 TMEM119Q4V9L6 283 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 IZUMO3Q5VZ72 239 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 PRR5LQ6MZQ0 368 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 CDC42EP5Q6NZY7 148 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 LRRC34Q8IZ02 419 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 ATP2A3Q93084 1043 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 COL5A2P05997 1499 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 SPATA31A1Q5TZJ5 1347 aa8.99□□□□□ -0.97
LIMCH1-216ENST00000512820 SMIM24O75264 130 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 RASA3Q14644 834 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 MTERF2Q49AM1 385 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 PODNQ7Z5L7 613 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 ZBTB8OSQ8IWT0 167 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 FAM213AQ9BRX8 229 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 MAD1L1Q9Y6D9 718 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 ATMINO43313 823 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 SPAG7O75391 227 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 STK10O94804 968 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 SCP2P22307 547 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 HNRNPH3P31942 346 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 NPEPPSP55786 919 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 ATL2Q8NHH9 583 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 SLC7A3Q8WY07 619 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 BAP1Q92560 729 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 CNKSR1Q969H4 720 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 RBM41Q96IZ5 413 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 MTMR9Q96QG7 549 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 TUBB6Q9BUF5 446 aa8.98□□□□□ -0.97
LIMCH1-216ENST00000512820 SPATS2LQ9NUQ6 558 aaKnown RBP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms