RNA–Protein interactions for RNA: ENST00000503215.5

SCLT1-204, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,364 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-204ENST00000503215 GBP3Q9H0R5 595 aa18.1■□□□□ 0.49
SCLT1-204ENST00000503215 RNF39Q9H2S5 420 aa18.1■□□□□ 0.49
SCLT1-204ENST00000503215 NGRNQ9NPE2 291 aaKnown RBP18.1■□□□□ 0.49
SCLT1-204ENST00000503215 GPRC5CQ9NQ84 441 aa18.1■□□□□ 0.49
SCLT1-204ENST00000503215 CDH22Q9UJ99 828 aa18.1■□□□□ 0.49
SCLT1-204ENST00000503215 ARID2Q68CP9 1835 aa18.09■□□□□ 0.49
SCLT1-204ENST00000503215 C2orf71A6NGG8 1288 aa18.09■□□□□ 0.49
SCLT1-204ENST00000503215 GAS2O43903 313 aaKnown RBP18.09■□□□□ 0.49
SCLT1-204ENST00000503215 TSPAN1O60635 241 aa18.09■□□□□ 0.49
SCLT1-204ENST00000503215 DDHD2O94830 711 aa18.09■□□□□ 0.49
SCLT1-204ENST00000503215 SKIP12755 728 aa18.09■□□□□ 0.49
SCLT1-204ENST00000503215 SLC11A1P49279 550 aa18.09■□□□□ 0.49
SCLT1-204ENST00000503215 RAB27AP51159 221 aa18.09■□□□□ 0.49
SCLT1-204ENST00000503215 CDCA3Q99618 268 aaPredicted RBP18.09■□□□□ 0.49
SCLT1-204ENST00000503215 S1PR5Q9H228 398 aa18.09■□□□□ 0.49
SCLT1-204ENST00000503215 HES2Q9Y543 173 aa18.09■□□□□ 0.49
SCLT1-204ENST00000503215 B4GALT5O43286 388 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 DCXO43602 365 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 USO1O60763 962 aaKnown RBP18.08■□□□□ 0.49
SCLT1-204ENST00000503215 DGAT1O75907 488 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 CXCL14O95715 111 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 RNASELQ05823 741 aaKnown RBP18.08■□□□□ 0.49
SCLT1-204ENST00000503215 MBTD1Q05BQ5 628 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 MXD4Q14582 209 aaPredicted RBP18.08■□□□□ 0.49
SCLT1-204ENST00000503215 AMHR2Q16671 573 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 ANKRD54Q6NXT1 300 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 TMEM184AQ6ZMB5 413 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 CDR2LQ86X02 465 aaPredicted RBP18.08■□□□□ 0.49
SCLT1-204ENST00000503215 RNF135Q8IUD6 432 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 VPS52Q8N1B4 723 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 C4orf32Q8N8J7 132 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 SUSD6Q92537 303 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 IGSF21Q96ID5 467 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 ZSCAN31Q96LW9 406 aaPredicted RBP18.08■□□□□ 0.49
SCLT1-204ENST00000503215 POLR3FQ9H1D9 316 aaPredicted RBP18.08■□□□□ 0.49
SCLT1-204ENST00000503215 FOXP1Q9H334 677 aaPredicted RBP18.08■□□□□ 0.49
SCLT1-204ENST00000503215 MUTYHQ9UIF7 546 aa18.08■□□□□ 0.49
SCLT1-204ENST00000503215 INO80B-WBP1J3KQ70 363 aa18.07■□□□□ 0.48
SCLT1-204ENST00000503215 CLASP2O75122 1294 aaKnown RBP18.07■□□□□ 0.48
SCLT1-204ENST00000503215 POMCP01189 267 aa18.07■□□□□ 0.48
SCLT1-204ENST00000503215 SMC1AQ14683 1233 aaKnown RBP18.07■□□□□ 0.48
SCLT1-204ENST00000503215 TTC38Q5R3I4 469 aa18.07■□□□□ 0.48
SCLT1-204ENST00000503215 KANK3Q6NY19 840 aa18.07■□□□□ 0.48
SCLT1-204ENST00000503215 POTEGQ6S5H5 508 aa18.07■□□□□ 0.48
SCLT1-204ENST00000503215 IFNLR1Q8IU57 520 aaPredicted RBP18.07■□□□□ 0.48
SCLT1-204ENST00000503215 FEZF2Q8TBJ5 459 aa18.07■□□□□ 0.48
SCLT1-204ENST00000503215 PGBD4Q96DM1 585 aa18.07■□□□□ 0.48
SCLT1-204ENST00000503215 TMEM169Q96HH4 297 aa18.07■□□□□ 0.48
SCLT1-204ENST00000503215 RSAD1Q9HA92 442 aa18.07■□□□□ 0.48
SCLT1-204ENST00000503215 POLD4Q9HCU8 107 aa18.07■□□□□ 0.48
SCLT1-204ENST00000503215 SH2B1Q9NRF2 756 aaPredicted RBP18.07■□□□□ 0.48
SCLT1-204ENST00000503215 MIOSQ9NXC5 875 aa18.07■□□□□ 0.48
SCLT1-204ENST00000503215 IPPQ9Y573 584 aa18.07■□□□□ 0.48
SCLT1-204ENST00000503215 ERLIN2O94905 339 aa18.06■□□□□ 0.48
SCLT1-204ENST00000503215 OR52Z1P0C646 297 aa18.06■□□□□ 0.48
SCLT1-204ENST00000503215 XRCC6P12956 609 aaKnown RBP eCLIP18.06■□□□□ 0.485e-6■■□□□ 13.3
SCLT1-204ENST00000503215 ALADP13716 330 aa18.06■□□□□ 0.48
SCLT1-204ENST00000503215 ARF4P18085 180 aaPredicted RBP18.06■□□□□ 0.48
SCLT1-204ENST00000503215 NCLP19338 710 aaKnown RBP18.06■□□□□ 0.48
SCLT1-204ENST00000503215 RBM25P49756 843 aaKnown RBP18.06■□□□□ 0.48
SCLT1-204ENST00000503215 TOB1P50616 345 aaPredicted RBP18.06■□□□□ 0.48
SCLT1-204ENST00000503215 ECM1Q16610 540 aa18.06■□□□□ 0.48
SCLT1-204ENST00000503215 DDX53Q86TM3 631 aaKnown RBP18.06■□□□□ 0.48
SCLT1-204ENST00000503215 NOSTRINQ8IVI9 506 aa18.06■□□□□ 0.48
SCLT1-204ENST00000503215 ZBP1Q9H171 429 aa18.06■□□□□ 0.48
SCLT1-204ENST00000503215 TUFT1Q9NNX1 390 aa18.06■□□□□ 0.48
SCLT1-204ENST00000503215 HCFC2Q9Y5Z7 792 aa18.06■□□□□ 0.48
SCLT1-204ENST00000503215 TRIOO75962 3097 aa18.06■□□□□ 0.48
SCLT1-204ENST00000503215 TTLL13PA6NNM8 815 aa18.05■□□□□ 0.48
SCLT1-204ENST00000503215 LOC730098B7Z3J9 87 aa18.05■□□□□ 0.48
SCLT1-204ENST00000503215 CA8P35219 290 aa18.05■□□□□ 0.48
SCLT1-204ENST00000503215 HMGN5P82970 282 aaKnown RBP18.05■□□□□ 0.48
SCLT1-204ENST00000503215 TFDP1Q14186 410 aa18.05■□□□□ 0.48
SCLT1-204ENST00000503215 FAM184AQ8NB25 1140 aa18.05■□□□□ 0.48
SCLT1-204ENST00000503215 BSNDQ8WZ55 320 aa18.05■□□□□ 0.48
SCLT1-204ENST00000503215 RPGRIP1Q96KN7 1286 aa18.05■□□□□ 0.48
SCLT1-204ENST00000503215 CCDC43Q96MW1 224 aaKnown RBP18.05■□□□□ 0.48
SCLT1-204ENST00000503215 GAD1Q99259 594 aa18.05■□□□□ 0.48
SCLT1-204ENST00000503215 POP1Q99575 1024 aaKnown RBP18.05■□□□□ 0.48
SCLT1-204ENST00000503215 POLR3CQ9BUI4 534 aaPredicted RBP18.05■□□□□ 0.48
SCLT1-204ENST00000503215 APOL6Q9BWW8 343 aa18.05■□□□□ 0.48
SCLT1-204ENST00000503215 USP20Q9Y2K6 914 aa18.05■□□□□ 0.48
SCLT1-204ENST00000503215 F8W810 466 aa18.04■□□□□ 0.48
SCLT1-204ENST00000503215 CD2BP2O95400 341 aaKnown RBP18.04■□□□□ 0.48
SCLT1-204ENST00000503215 CTSAP10619 480 aa18.04■□□□□ 0.48
SCLT1-204ENST00000503215 ITGA4P13612 1032 aa18.04■□□□□ 0.48
SCLT1-204ENST00000503215 POU5F1BQ06416 359 aa18.04■□□□□ 0.48
SCLT1-204ENST00000503215 C12orf76Q8N812 135 aaPredicted RBP18.04■□□□□ 0.48
SCLT1-204ENST00000503215 URGCPQ8TCY9 931 aa18.04■□□□□ 0.48
SCLT1-204ENST00000503215 ZFP42Q96MM3 310 aa18.04■□□□□ 0.48
SCLT1-204ENST00000503215 PHF7Q9BWX1 381 aaPredicted RBP18.04■□□□□ 0.48
SCLT1-204ENST00000503215 CSRNP2Q9H175 543 aa18.04■□□□□ 0.48
SCLT1-204ENST00000503215 NXF3Q9H4D5 531 aaKnown RBP18.04■□□□□ 0.48
SCLT1-204ENST00000503215 DBR1Q9UK59 544 aaKnown RBP18.04■□□□□ 0.48
SCLT1-204ENST00000503215 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.04■□□□□ 0.48
SCLT1-204ENST00000503215 ARL5CA6NH57 179 aa18.04■□□□□ 0.48
SCLT1-204ENST00000503215 SSBP05455 408 aaKnown RBP eCLIP18.04■□□□□ 0.48
SCLT1-204ENST00000503215 WEE2P0C1S8 567 aa18.04■□□□□ 0.48
SCLT1-204ENST00000503215 SP100P23497 879 aaPredicted RBP18.04■□□□□ 0.48
SCLT1-204ENST00000503215 RPA1P27694 616 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms