RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 MYPNQ86TC9 1320 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 ATRXP46100 2492 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 EPG5Q9HCE0 2579 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 CCL15-CCL14A0A0B4J2E2 113 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 HTATSF1O43719 755 aaKnown RBP5.1□□□□□ -1.59
USP54-217ENST00000498213 PLA2G1BP04054 148 aaKnown RBP5.1□□□□□ -1.59
USP54-217ENST00000498213 VIL1P09327 827 aaKnown RBP5.1□□□□□ -1.59
USP54-217ENST00000498213 HOXD10P28358 340 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 IL13P35225 146 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 SLC6A11P48066 632 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 NFKB2Q00653 900 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 TFF2Q03403 129 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 PRKCZQ05513 592 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 LSAMPQ13449 338 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 SHHQ15465 462 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 CCL15Q16663 113 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 NAALADL2Q58DX5 795 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 C9orf50Q5SZB4 431 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 CD300LDQ6UXZ3 194 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 TTLL7Q6ZT98 887 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 USP53Q70EK8 1073 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 KDM3BQ7LBC6 1761 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 MILR1Q7Z6M3 343 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 MORC1Q86VD1 984 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 RIOX2Q8IUF8 465 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 CCDC103Q8IW40 242 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 ZBTB8AQ96BR9 441 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 LBHD1Q9BQE6 289 aaPredicted RBP5.1□□□□□ -1.59
USP54-217ENST00000498213 NYXQ9GZU5 481 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 PCDH18Q9HCL0 1135 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 CLDND1Q9NY35 253 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 UNC79Q9P2D8 2635 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 CPA4Q9UI42 421 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 TMEFF2Q9UIK5 374 aaPredicted RBP5.1□□□□□ -1.59
USP54-217ENST00000498213 PALD1Q9ULE6 856 aa5.1□□□□□ -1.59
USP54-217ENST00000498213 ZSWIM8A7E2V4 1837 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 COL2A1P02458 1487 aaPredicted RBP5.09□□□□□ -1.59
USP54-217ENST00000498213 HEG1Q9ULI3 1381 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 FAM205AQ6ZU69 1335 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 SPTBN4Q9H254 2564 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 A0A1W2PQU0 124 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 H7BY64 318 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 FFAR3O14843 346 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 TLR2O60603 784 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 DGKIO75912 1065 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 BBOX1O75936 387 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 ADRB1P08588 477 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 KCNQ1P51787 676 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 CYP4F3Q08477 520 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 MAP4K2Q12851 820 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 RAB33AQ14088 237 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 KCTD2Q14681 263 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 SUSD4Q5VX71 490 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 SULT6B1Q6IMI4 303 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 LRRC47Q8N1G4 583 aaKnown RBP5.09□□□□□ -1.59
USP54-217ENST00000498213 NGEFQ8N5V2 710 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 ZBTB38Q8NAP3 1195 aaPredicted RBP5.09□□□□□ -1.59
USP54-217ENST00000498213 SYT8Q8NBV8 401 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 RCBTB1Q8NDN9 531 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 OPTNQ96CV9 577 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 BORCS6Q96GS4 357 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 AARSD1Q9BTE6 412 aaKnown RBP5.09□□□□□ -1.59
USP54-217ENST00000498213 TANGO6Q9C0B7 1094 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 C11orf49Q9H6J7 331 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 NTMQ9P121 344 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 USP16Q9Y5T5 823 aa5.09□□□□□ -1.59
USP54-217ENST00000498213 CEMIPQ8WUJ3 1361 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 IBTKQ9P2D0 1353 aaPredicted RBP5.08□□□□□ -1.6
USP54-217ENST00000498213 SGSM2O43147 1006 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 KLF4O43474 513 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 ADCY3O60266 1144 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 MAFKO60675 156 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 WDHD1O75717 1129 aaPredicted RBP5.08□□□□□ -1.6
USP54-217ENST00000498213 LCP1P13796 627 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 ATP2B1P20020 1258 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 GRIA2P42262 883 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 SLURP1P55000 103 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 SMAD4Q13485 552 aaKnown RBP5.08□□□□□ -1.6
USP54-217ENST00000498213 ZNF790Q6PG37 636 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 LIPIQ6XZB0 460 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 NLRP10Q86W26 655 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 ADGRG2Q8IZP9 1017 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 KREMEN2Q8NCW0 462 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 ST13P5Q8NFI4 369 aaPredicted RBP5.08□□□□□ -1.6
USP54-217ENST00000498213 PNISRQ8TF01 805 aaKnown RBP5.08□□□□□ -1.6
USP54-217ENST00000498213 SGSM3Q96HU1 749 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 SPATA25Q9BR10 227 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 MXD3Q9BW11 206 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 EPB41L1Q9H4G0 881 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 PANK3Q9H999 370 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 NGRNQ9NPE2 291 aaKnown RBP5.08□□□□□ -1.6
USP54-217ENST00000498213 POLLQ9UGP5 575 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 GABRQQ9UN88 632 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 PCDHB4Q9Y5E5 795 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 X6R8D5 127 aa5.08□□□□□ -1.6
USP54-217ENST00000498213 ALPK3Q96L96 1907 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 TRAV20A0A0B4J274 112 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 A0A1B0GTL3 188 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 KRIT1O00522 736 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 WNT10BO00744 389 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms