RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 ARHGEF16Q5VV41 709 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 CDC42EP5Q6NZY7 148 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 C3orf67Q6ZVT6 689 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 PDZD3Q86UT5 571 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 ANKRD13BQ86YJ7 626 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 CDCA3Q99618 268 aaPredicted RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 SMAD5Q99717 465 aaKnown RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 NGRNQ9NPE2 291 aaKnown RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 ANO2Q9NQ90 1003 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 PFDN4Q9NQP4 134 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 ARHGEF3Q9NR81 526 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 DZANK1Q9NVP4 752 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 ZSCAN32Q9NX65 697 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 DDX19BQ9UMR2 479 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 ZNF148Q9UQR1 794 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 LRRK2Q5S007 2527 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 DOPEY1Q5JWR5 2465 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 A0A087WUV0 522 aaPredicted RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 SFI1A8K8P3 1242 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 BUB1BO60566 1050 aaPredicted RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 ECEL1O95672 775 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 GH1P01241 217 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 GNSP15586 552 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 BDNFP23560 247 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 HNF1BP35680 557 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 EVCP57679 992 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 AP2B1P63010 937 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 ITIH3Q06033 890 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 BYSLQ13895 437 aaKnown RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 STK38Q15208 465 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 CNGA3Q16281 694 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 DGKDQ16760 1214 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 HERC4Q5GLZ8 1057 aaPredicted RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 SH3D19Q5HYK7 790 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 SYCP2LQ5T4T6 812 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 CAPRIN2Q6IMN6 1127 aaKnown RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 ZNF852Q6ZMS4 543 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 C1orf210Q8IVY1 113 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 NEK11Q8NG66 645 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 B4GALNT2Q8NHY0 566 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 POF1BQ8WVV4 589 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 CCT6BQ92526 530 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 DHX58Q96C10 678 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 C17orf80Q9BSJ5 609 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 METTL22Q9BUU2 404 aaPredicted RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 SNRKQ9NRH2 765 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 SAMM50Q9Y512 469 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 MAN2B1O00754 1011 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 ATG13O75143 517 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 NDUFS2O75306 463 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 TCF15Q12870 199 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 PAK2Q13177 524 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 ITGB3BPQ13352 177 aaPredicted RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 RAPGEF1Q13905 1077 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 CEP85LQ5SZL2 805 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 IQSEC1Q6DN90 963 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 RSRC2Q7L4I2 434 aaKnown RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 GAS2L3Q86XJ1 694 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 METTL13Q8N6R0 699 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 LPIN2Q92539 896 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 STMN2Q93045 179 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 ZDHHC15Q96MV8 337 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 NUDT16L1Q9BRJ7 211 aaKnown RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 WDR11Q9BZH6 1224 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 RNF146Q9NTX7 359 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 SPATA7Q9P0W8 599 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 KIAA1468Q9P260 1216 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 DMGDHQ9UI17 866 aaKnown RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 FAF1Q9UNN5 650 aaPredicted RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 MAGED1Q9Y5V3 778 aaPredicted RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 SCINQ9Y6U3 715 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 SETXQ7Z333 2677 aaKnown RBP5.53□□□□□ -1.52
USP54-216ENST00000498143 C4BP0C0L5 1744 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 C17orf102A2RUQ5 167 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 MUSKO15146 869 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 RANBP6O60518 1105 aaKnown RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 GADD45BO75293 160 aaPredicted RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 NADKO95544 446 aaPredicted RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 APOA4P06727 396 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 GCFC2P16383 781 aaKnown RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 GRK2P25098 689 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 OAS2P29728 719 aaKnown RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 LRPAP1P30533 357 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 ARPP19P56211 112 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 MXRA7P84157 204 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 PPP2R5CQ13362 524 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 SNW1Q13573 536 aaKnown RBP5.52□□□□□ -1.53
USP54-216ENST00000498143 LETM2Q2VYF4 491 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 TMEM259Q4ZIN3 620 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 SYT10Q6XYQ8 523 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 KRT25Q7Z3Z0 450 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 BMP8AQ7Z5Y6 402 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 SNX21Q969T3 373 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 CCDC17Q96LX7 622 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 CEP63Q96MT8 703 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 TSNARE1Q96NA8 513 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 SLF1Q9BQI6 1058 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 VCPKMTQ9H867 229 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 VPS37BQ9H9H4 285 aa5.52□□□□□ -1.53
USP54-216ENST00000498143 SUGCTQ9HAC7 445 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms