RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 DCAF4L1Q3SXM0 396 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 ZNF568Q3ZCX4 644 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 LIN9Q5TKA1 542 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 CATSPER4Q7RTX7 472 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 MORC4Q8TE76 937 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 AFG1LQ8WV93 481 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 CCDC127Q96BQ5 260 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 TRIM11Q96F44 468 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 MIS12Q9H081 205 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 WDR90Q96KV7 1748 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 C17orf102A2RUQ5 167 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 LGR5O75473 907 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 CABYRO75952 493 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 KRT5P13647 590 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 ARSHQ5FYA8 562 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 RNF180Q86T96 592 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 CD302Q8IX05 232 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 SYCE1Q8N0S2 351 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 CTNNBL1Q8WYA6 563 aaPredicted RBP9.08□□□□□ -0.96
USP54-215ENST00000497106 NOX5Q96PH1 765 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 SIPA1L1O43166 1804 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 H3BRB1 525 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 TLK2Q86UE8 772 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 CEP112Q8N8E3 955 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 SECISBP2LQ93073 1101 aaKnown RBP9.08□□□□□ -0.96
USP54-215ENST00000497106 MTG1Q9BT17 334 aaPredicted RBP9.08□□□□□ -0.96
USP54-215ENST00000497106 IFIH1Q9BYX4 1025 aaKnown RBP9.08□□□□□ -0.96
USP54-215ENST00000497106 TUT1Q9H6E5 874 aaKnown RBP9.08□□□□□ -0.96
USP54-215ENST00000497106 PLCB1Q9NQ66 1216 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 TEX33O43247 280 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 ZC3H11AO75152 810 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP54-215ENST00000497106 ATG7O95352 703 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 PSMC4P43686 418 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 FMO5P49326 533 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 SP3Q02447 781 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 MAMDC4Q6UXC1 1216 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 DLK2Q6UY11 383 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 SAPCD2Q86UD0 394 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 TRIM59Q8IWR1 403 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 MS4A4AQ96JQ5 239 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 PURBQ96QR8 312 aaKnown RBP9.08□□□□□ -0.96
USP54-215ENST00000497106 INTS2Q9H0H0 1204 aaKnown RBP9.08□□□□□ -0.96
USP54-215ENST00000497106 URI1O94763 535 aaPredicted RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 NOP2P46087 812 aaKnown RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 GPC3P51654 580 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 CDK17Q00537 523 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 ARID5AQ03989 594 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 SNRNP35Q16560 246 aaKnown RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 Q3C1V9 767 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 ZC2HC1CQ53FD0 456 aaPredicted RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 PDXDC1Q6P996 788 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 TMEM8AQ9HCN3 771 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 TXNRD2Q9NNW7 524 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 PUF60Q9UHX1 559 aaKnown RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 DNAJC25-GNG10A0A024R161 153 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 ADCY3O60266 1144 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 ZSCAN20P17040 1043 aaPredicted RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 B3GNT9Q6UX72 402 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 TRIM58Q8NG06 486 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 RBAKQ9NYW8 714 aaPredicted RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 LCMT1Q9UIC8 334 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 GINS2Q9Y248 185 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 TERF1P54274 439 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 PTK2Q05397 1052 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 LRMPQ12912 555 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 PLCB4Q15147 1175 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 ANO5Q75V66 913 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 MTERF4Q7Z6M4 381 aaKnown RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 FBXL13Q8NEE6 735 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 FAM213AQ9BRX8 229 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 SELENOOQ9BVL4 669 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 SEZ6LQ9BYH1 1024 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 DNAI1Q9UI46 699 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 SSU72P8A0A1W2PR75 194 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 TLR3O15455 904 aaKnown RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 TOM1L1O75674 476 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 AXLP30530 894 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 GJA5P36382 358 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 ADCYAP1R1P41586 468 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 EHHADHQ08426 723 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 CCDC144BQ3MJ40 725 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 ATF7IP2Q5U623 682 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 TAF2Q6P1X5 1199 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 EPM2AIP1Q7L775 607 aaPredicted RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 PRPF31Q8WWY3 499 aaKnown RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 DHX38Q92620 1227 aaKnown RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 EMID1Q96A84 441 aaPredicted RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 NAPGQ99747 312 aaPredicted RBP9.07□□□□□ -0.96
USP54-215ENST00000497106 CRACR2AQ9BSW2 395 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 KCTD10Q9H3F6 313 aa9.07□□□□□ -0.96
USP54-215ENST00000497106 NRCAMQ92823 1304 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 C6orf222P0C671 652 aaPredicted RBP9.06□□□□□ -0.96
USP54-215ENST00000497106 CYP2C9P11712 490 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 GRIK4Q16099 956 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 LRRC55Q6ZSA7 311 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 PPM1KQ8N3J5 372 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 NDUFA10O95299 355 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 MYO1EQ12965 1108 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 UGCGQ16739 394 aa9.06□□□□□ -0.96
USP54-215ENST00000497106 SMYD5Q6GMV2 418 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms