RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 TUBE1Q9UJT0 475 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 ESYT3A0FGR9 886 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 IFNA8P32881 189 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 RFFLQ8WZ73 363 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 HDLBPQ00341 1268 aaKnown RBP20.4■□□□□ 0.86
COL27A1-207ENST00000494090 DPYDQ12882 1025 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 CDO1Q16878 200 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 C12orf60Q5U649 245 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 TMEM270Q6UE05 265 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 STAG2Q8N3U4 1231 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 ZNF512BQ96KM6 892 aaPredicted RBP20.4■□□□□ 0.86
COL27A1-207ENST00000494090 UPF3AQ9H1J1 476 aaKnown RBP20.4■□□□□ 0.86
COL27A1-207ENST00000494090 HPCAL4Q9UM19 191 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 MAGED2Q9UNF1 606 aaPredicted RBP20.4■□□□□ 0.86
COL27A1-207ENST00000494090 TNS3Q68CZ2 1445 aa20.4■□□□□ 0.86
COL27A1-207ENST00000494090 KRT33BQ14525 404 aa20.39■□□□□ 0.86
COL27A1-207ENST00000494090 KIAA1755Q5JYT7 1200 aa20.39■□□□□ 0.86
COL27A1-207ENST00000494090 BEND6Q5SZJ8 279 aaPredicted RBP20.39■□□□□ 0.86
COL27A1-207ENST00000494090 FBXL13Q8NEE6 735 aa20.39■□□□□ 0.86
COL27A1-207ENST00000494090 SPATA4Q8NEY3 305 aa20.39■□□□□ 0.86
COL27A1-207ENST00000494090 FAM213AQ9BRX8 229 aa20.39■□□□□ 0.86
COL27A1-207ENST00000494090 KLHL8Q9P2G9 620 aaPredicted RBP20.39■□□□□ 0.86
COL27A1-207ENST00000494090 TMEM247A6NEH6 219 aa20.39■□□□□ 0.85
COL27A1-207ENST00000494090 PSMC5P62195 406 aa20.39■□□□□ 0.85
COL27A1-207ENST00000494090 ZNF211Q13398 564 aaPredicted RBP20.39■□□□□ 0.85
COL27A1-207ENST00000494090 SLC12A1Q13621 1099 aa20.39■□□□□ 0.85
COL27A1-207ENST00000494090 TRIM72Q6ZMU5 477 aa20.39■□□□□ 0.85
COL27A1-207ENST00000494090 TSPYL2Q9H2G4 693 aaPredicted RBP20.39■□□□□ 0.85
COL27A1-207ENST00000494090 ACAD9Q9H845 621 aa20.39■□□□□ 0.85
COL27A1-207ENST00000494090 SUN2Q9UH99 717 aa20.39■□□□□ 0.85
COL27A1-207ENST00000494090 DENND3A2RUS2 1198 aa20.39■□□□□ 0.85
COL27A1-207ENST00000494090 SLC10A5Q5PT55 438 aa20.39■□□□□ 0.85
COL27A1-207ENST00000494090 KCNV1Q6PIU1 500 aa20.39■□□□□ 0.85
COL27A1-207ENST00000494090 TRIM9Q9C026 710 aa20.39■□□□□ 0.85
COL27A1-207ENST00000494090 SPATS2LQ9NUQ6 558 aaKnown RBP20.39■□□□□ 0.85
COL27A1-207ENST00000494090 STAT3P40763 770 aa20.39■□□□□ 0.85
COL27A1-207ENST00000494090 ADSSL1Q8N142 457 aa20.39■□□□□ 0.85
COL27A1-207ENST00000494090 C11orf70Q9BRQ4 267 aa20.39■□□□□ 0.85
COL27A1-207ENST00000494090 ZCCHC17Q9NP64 241 aaKnown RBP20.39■□□□□ 0.85
COL27A1-207ENST00000494090 UBE4BO95155 1302 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 F5H6K3 240 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 TMPRSS15P98073 1019 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 KLRC3Q07444 240 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 WDR75Q8IWA0 830 aaKnown RBP20.38■□□□□ 0.85
COL27A1-207ENST00000494090 GANCQ8TET4 914 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 TTC17Q96AE7 1141 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 PDXKO00764 312 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 MKRN3Q13064 507 aaKnown RBP20.38■□□□□ 0.85
COL27A1-207ENST00000494090 DHX34Q14147 1143 aaKnown RBP20.38■□□□□ 0.85
COL27A1-207ENST00000494090 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.38■□□□□ 0.85
COL27A1-207ENST00000494090 RASGRP2Q7LDG7 609 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 NLRP14Q86W24 1093 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 EIF2AK1Q9BQI3 630 aaKnown RBP20.38■□□□□ 0.85
COL27A1-207ENST00000494090 MRPL4Q9BYD3 311 aaKnown RBP20.38■□□□□ 0.85
COL27A1-207ENST00000494090 IRAK4Q9NWZ3 460 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 FNDC3AQ9Y2H6 1198 aaKnown RBP20.38■□□□□ 0.85
COL27A1-207ENST00000494090 FMR1Q06787 632 aaKnown RBP eCLIP20.38■□□□□ 0.85
COL27A1-207ENST00000494090 PPP6R3Q5H9R7 873 aaPredicted RBP20.38■□□□□ 0.85
COL27A1-207ENST00000494090 AP1ARQ63HQ0 302 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 SNX12Q9UMY4 172 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 A0A0G2JND7 137 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 SDC4P31431 198 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 ZNF394Q53GI3 561 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 CNPY4Q8N129 248 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 IP6K2Q9UHH9 426 aa20.38■□□□□ 0.85
COL27A1-207ENST00000494090 CCDC138Q96M89 665 aa20.37■□□□□ 0.85
COL27A1-207ENST00000494090 TRAIPQ9BWF2 469 aa20.37■□□□□ 0.85
COL27A1-207ENST00000494090 KPNA7A9QM74 516 aa20.37■□□□□ 0.85
COL27A1-207ENST00000494090 NR1I3Q14994 352 aa20.37■□□□□ 0.85
COL27A1-207ENST00000494090 PASD1Q8IV76 773 aa20.37■□□□□ 0.85
COL27A1-207ENST00000494090 GCOM2Q9BZD3 368 aaPredicted RBP20.37■□□□□ 0.85
COL27A1-207ENST00000494090 SUCLA2Q9P2R7 463 aaPredicted RBP20.37■□□□□ 0.85
COL27A1-207ENST00000494090 KRT7P08729 469 aa20.37■□□□□ 0.85
COL27A1-207ENST00000494090 SRGNP10124 158 aa20.37■□□□□ 0.85
COL27A1-207ENST00000494090 SP8Q8IXZ3 490 aa20.37■□□□□ 0.85
COL27A1-207ENST00000494090 NSUN4Q96CB9 384 aaKnown RBP20.37■□□□□ 0.85
COL27A1-207ENST00000494090 ASB14A6NK59 587 aa20.37■□□□□ 0.85
COL27A1-207ENST00000494090 CHUKO15111 745 aa20.37■□□□□ 0.85
COL27A1-207ENST00000494090 VSNL1P62760 191 aa20.37■□□□□ 0.85
COL27A1-207ENST00000494090 OCRLQ01968 901 aa20.37■□□□□ 0.85
COL27A1-207ENST00000494090 C7orf25Q9BPX7 421 aa20.37■□□□□ 0.85
COL27A1-207ENST00000494090 KIAA0391O15091 583 aaKnown RBP20.36■□□□□ 0.85
COL27A1-207ENST00000494090 EYA4O95677 639 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 HSPA4LO95757 839 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 NNMTP40261 264 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 GPSM2P81274 684 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 YWHAHQ04917 246 aaPredicted RBP20.36■□□□□ 0.85
COL27A1-207ENST00000494090 GLYCTKQ8IVS8 523 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.36■□□□□ 0.852e-7■■■■■ 79.5
COL27A1-207ENST00000494090 LXNQ9BS40 222 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 MFSD14CQ5VZR4 134 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 FSD1LQ9BXM9 530 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 FIS1Q9Y3D6 152 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 SLC16A3O15427 465 aaKnown RBP20.36■□□□□ 0.85
COL27A1-207ENST00000494090 CCDC137Q6PK04 289 aaKnown RBP20.36■□□□□ 0.85
COL27A1-207ENST00000494090 FAM47EQ6ZV65 393 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 SNF8Q96H20 258 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 POLD4Q9HCU8 107 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 RHOBTB3O94955 611 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 N4BP2L2Q92802 583 aaPredicted RBP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms