RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 APOL5Q9BWW9 433 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 TRIM6Q9C030 488 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-213ENST00000493475 GBP3Q9H0R5 595 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 ZSWIM4Q9H7M6 989 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 AGPAT5Q9NUQ2 364 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 RNF19AQ9NV58 838 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 SORCS3Q9UPU3 1222 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 USTQ9Y2C2 406 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 PLXNA4Q9HCM2 1894 aa12.93□□□□□ -0.34
COL6A3-213ENST00000493475 ADAMTS3O15072 1205 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 CLASP2O75122 1294 aaKnown RBP12.92□□□□□ -0.34
COL6A3-213ENST00000493475 CSDE1O75534 798 aaKnown RBP12.92□□□□□ -0.34
COL6A3-213ENST00000493475 SRGAP2CP0DJJ0 459 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 AXLP30530 894 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 YWHABP31946 246 aaKnown RBP12.92□□□□□ -0.34
COL6A3-213ENST00000493475 EPHA7Q15375 998 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 B3GNT9Q6UX72 402 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 ANO5Q75V66 913 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 C4orf19Q8IY42 314 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 MTRQ99707 1265 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 LXNQ9BS40 222 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 PHF20Q9BVI0 1012 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 ZBP1Q9H171 429 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 MFSD1Q9H3U5 465 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 SFXN1Q9H9B4 322 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 RSAD1Q9HA92 442 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 MRPL17Q9NRX2 175 aaKnown RBP12.92□□□□□ -0.34
COL6A3-213ENST00000493475 TBC1D13Q9NVG8 400 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 PCDHB2Q9Y5E7 798 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 ATG2AQ2TAZ0 1938 aa12.92□□□□□ -0.34
COL6A3-213ENST00000493475 C5orf42Q9H799 3197 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 NT5C1B-RDH14C9J2C7 533 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 M0R2N6 131 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 URODP06132 367 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 ITGA4P13612 1032 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 KLRC2P26717 231 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 KRT2P35908 639 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 RBM10P98175 930 aaKnown RBP12.91□□□□□ -0.34
COL6A3-213ENST00000493475 DRP2Q13474 957 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 EMC2Q15006 297 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 XKR9Q5GH70 373 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 RARS2Q5T160 578 aaKnown RBP12.91□□□□□ -0.34
COL6A3-213ENST00000493475 PLA2G4FQ68DD2 849 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 NCAPH2Q6IBW4 605 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 KIAA1841Q6NSI8 718 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 PIK3AP1Q6ZUJ8 805 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 CCDC149Q6ZUS6 474 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 OTOP3Q7RTS5 596 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 KREMEN2Q8NCW0 462 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 PRPF31Q8WWY3 499 aaKnown RBP12.91□□□□□ -0.34
COL6A3-213ENST00000493475 STAMQ92783 540 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 GJA10Q969M2 543 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 SH2D3AQ9BRG2 576 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 DHX33Q9H6R0 707 aaKnown RBP12.91□□□□□ -0.34
COL6A3-213ENST00000493475 KCNMB3Q9NPA1 279 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 DAXXQ9UER7 740 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-213ENST00000493475 KCNJ14Q9UNX9 436 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 FAN1Q9Y2M0 1017 aa12.91□□□□□ -0.34
COL6A3-213ENST00000493475 SLC37A4O43826 429 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 OFD1O75665 1012 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 ADH1AP07327 375 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 GALTP07902 379 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 SP100P23497 879 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-213ENST00000493475 ANAPC15P60006 121 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 LAMTOR4Q0VGL1 99 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 LONRF3Q496Y0 759 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 NOTUMQ6P988 496 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 CYP26C1Q6V0L0 522 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 ZDHHC14Q8IZN3 488 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 RNF149Q8NC42 400 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 LPPQ93052 612 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 FAM212AQ96EL1 285 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 NRDE2Q9H7Z3 1164 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 VAV3Q9UKW4 847 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 PCDHA12Q9UN75 941 aa12.9□□□□□ -0.34
COL6A3-213ENST00000493475 TMEM150BA6NC51 233 aa12.89□□□□□ -0.35
COL6A3-213ENST00000493475 DGAT1O75907 488 aa12.89□□□□□ -0.35
COL6A3-213ENST00000493475 NCLP19338 710 aaKnown RBP12.89□□□□□ -0.35
COL6A3-213ENST00000493475 NPEPPSP55786 919 aa12.89□□□□□ -0.35
COL6A3-213ENST00000493475 CREMQ03060 361 aa12.89□□□□□ -0.35
COL6A3-213ENST00000493475 C15orf39Q6ZRI6 1047 aa12.89□□□□□ -0.35
COL6A3-213ENST00000493475 MRPL10Q7Z7H8 261 aaKnown RBP12.89□□□□□ -0.35
COL6A3-213ENST00000493475 KSR1Q8IVT5 923 aa12.89□□□□□ -0.35
COL6A3-213ENST00000493475 TPH2Q8IWU9 490 aa12.89□□□□□ -0.35
COL6A3-213ENST00000493475 TMEM143Q96AN5 459 aa12.89□□□□□ -0.35
COL6A3-213ENST00000493475 CEP89Q96ST8 783 aa12.89□□□□□ -0.35
COL6A3-213ENST00000493475 POMKQ9H5K3 350 aa12.89□□□□□ -0.35
COL6A3-213ENST00000493475 IFT122Q9HBG6 1241 aa12.89□□□□□ -0.35
COL6A3-213ENST00000493475 ORC3Q9UBD5 711 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-213ENST00000493475 C2CD4DB7Z1M9 353 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 INO80B-WBP1J3KQ70 363 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 EML1O00423 815 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 EDIL3O43854 480 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 PFKFB2O60825 505 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 STBD1O95210 358 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 RFX1P22670 979 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 AVPR2P30518 371 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 SLC11A1P49279 550 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 POU5F1BQ06416 359 aa12.88□□□□□ -0.35
COL6A3-213ENST00000493475 SCRN1Q12765 414 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms