RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 CDKL5O76039 1030 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 DDHD2O94830 711 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 BRD1O95696 1058 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 SRGAP2CP0DJJ0 459 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 AVPR2P30518 371 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 HOXA11P31270 313 aaPredicted RBP13.86□□□□□ -0.19
CPSF3-204ENST00000489403 YWHABP31946 246 aaKnown RBP13.86□□□□□ -0.19
CPSF3-204ENST00000489403 RFC5P40937 340 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 LAMTOR4Q0VGL1 99 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 MTMR3Q13615 1198 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 EPHA7Q15375 998 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 PTPN14Q15678 1187 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 EARS2Q5JPH6 523 aaKnown RBP13.86□□□□□ -0.19
CPSF3-204ENST00000489403 UBXN11Q5T124 520 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 NCAPH2Q6IBW4 605 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 PIK3AP1Q6ZUJ8 805 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 SRGAP1Q7Z6B7 1085 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 MRPL10Q7Z7H8 261 aaKnown RBP13.86□□□□□ -0.19
CPSF3-204ENST00000489403 C4orf19Q8IY42 314 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 TMEM87AQ8NBN3 555 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 URGCPQ8TCY9 931 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 PRPF31Q8WWY3 499 aaKnown RBP13.86□□□□□ -0.19
CPSF3-204ENST00000489403 SMOC2Q9H3U7 446 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 RSAD1Q9HA92 442 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 RGL1Q9NZL6 768 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 SORCS3Q9UPU3 1222 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 MYO10Q9HD67 2058 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 GAS2O43903 313 aaKnown RBP13.85□□□□□ -0.19
CPSF3-204ENST00000489403 XBP1P17861 261 aa13.85□□□□□ -0.19
CPSF3-204ENST00000489403 SPIRE1Q08AE8 756 aa13.85□□□□□ -0.19
CPSF3-204ENST00000489403 EMC2Q15006 297 aa13.85□□□□□ -0.19
CPSF3-204ENST00000489403 CABP7Q86V35 215 aa13.85□□□□□ -0.19
CPSF3-204ENST00000489403 EXOC8Q8IYI6 725 aa13.85□□□□□ -0.19
CPSF3-204ENST00000489403 UBALD2Q8IYN6 164 aa13.85□□□□□ -0.19
CPSF3-204ENST00000489403 TDRD5Q8NAT2 981 aaKnown RBP13.85□□□□□ -0.19
CPSF3-204ENST00000489403 DYDC2Q96IM9 177 aa13.85□□□□□ -0.19
CPSF3-204ENST00000489403 DBR1Q9UK59 544 aaKnown RBP13.85□□□□□ -0.19
CPSF3-204ENST00000489403 TPCN1Q9ULQ1 816 aa13.85□□□□□ -0.19
CPSF3-204ENST00000489403 C2orf16Q68DN1 1984 aa13.85□□□□□ -0.19
CPSF3-204ENST00000489403 CNTNAP2Q9UHC6 1331 aa13.85□□□□□ -0.19
CPSF3-204ENST00000489403 FAM205CA6NFA0 338 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 NRP1O14786 923 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 ZBTB39O15060 712 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 PFKFB2O60825 505 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 CTDNEP1O95476 244 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 POMCP01189 267 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 SSBP05455 408 aaKnown RBP eCLIP13.84□□□□□ -0.19
CPSF3-204ENST00000489403 ASGR2P07307 311 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 NCLP19338 710 aaKnown RBP13.84□□□□□ -0.19
CPSF3-204ENST00000489403 CLCN4P51793 760 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 CYP4A11Q02928 519 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 CTTNQ14247 550 aaKnown RBP13.84□□□□□ -0.19
CPSF3-204ENST00000489403 ATAT1Q5SQI0 421 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 TMC5Q6UXY8 1006 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 FERMT3Q86UX7 667 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 PPFIBP1Q86W92 1011 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 ZDHHC14Q8IZN3 488 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 RNF149Q8NC42 400 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 SMG8Q8ND04 991 aaKnown RBP13.84□□□□□ -0.19
CPSF3-204ENST00000489403 TCP11Q8WWU5 503 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 KLHL5Q96PQ7 755 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 MTRQ99707 1265 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 NAP1L4Q99733 375 aaKnown RBP13.84□□□□□ -0.19
CPSF3-204ENST00000489403 TMEM175Q9BSA9 504 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 SFXN1Q9H9B4 322 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 FAM86C1Q9NVL1 165 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 STK39Q9UEW8 545 aa13.84□□□□□ -0.19
CPSF3-204ENST00000489403 PLXNA3P51805 1871 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 ASAP2O43150 1006 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 MARCH6O60337 910 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 LILRB3O75022 631 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 NR5A1Q13285 461 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 XKR9Q5GH70 373 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 OTUD6AQ7L8S5 288 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 SLFN12Q8IYM2 578 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 FAM193BQ96PV7 902 aaPredicted RBP13.83□□□□□ -0.2
CPSF3-204ENST00000489403 EMILIN2Q9BXX0 1053 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 EIF2AQ9BY44 585 aaKnown RBP13.83□□□□□ -0.2
CPSF3-204ENST00000489403 ZSWIM4Q9H7M6 989 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 XPNPEP1Q9NQW7 623 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 MARCH5Q9NX47 278 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 KANSL3Q9P2N6 904 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 ORC3Q9UBD5 711 aaPredicted RBP13.83□□□□□ -0.2
CPSF3-204ENST00000489403 USTQ9Y2C2 406 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 FAN1Q9Y2M0 1017 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 ZDBF2Q9HCK1 2354 aa13.83□□□□□ -0.2
CPSF3-204ENST00000489403 TDRD15B5MCY1 1934 aaKnown RBP13.82□□□□□ -0.2
CPSF3-204ENST00000489403 TSPAN1O60635 241 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 ERLIN2O94905 339 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 SLITRK3O94933 977 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 SOD2P04179 222 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 ALDH2P05091 517 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 CNPP09543 421 aaKnown RBP13.82□□□□□ -0.2
CPSF3-204ENST00000489403 ITGA4P13612 1032 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 KLRC2P26717 231 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 AXLP30530 894 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 GPR149Q86SP6 731 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 COLGALT2Q8IYK4 626 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 PLCD3Q8N3E9 789 aa13.82□□□□□ -0.2
CPSF3-204ENST00000489403 CNNM3Q8NE01 707 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms