RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 FAM160B1Q5W0V3 765 aa13.13□□□□□ -0.31
HDAC6-233ENST00000489352 CKAP2LQ8IYA6 745 aa13.13□□□□□ -0.31
HDAC6-233ENST00000489352 GLIS3Q8NEA6 775 aa13.13□□□□□ -0.31
HDAC6-233ENST00000489352 PANK1Q8TE04 598 aa13.13□□□□□ -0.31
HDAC6-233ENST00000489352 MAP7D2Q96T17 732 aa13.13□□□□□ -0.31
HDAC6-233ENST00000489352 MKNK1Q9BUB5 465 aa13.13□□□□□ -0.31
HDAC6-233ENST00000489352 POLIQ9UNA4 740 aa13.13□□□□□ -0.31
HDAC6-233ENST00000489352 NEUROG3Q9Y4Z2 214 aa13.13□□□□□ -0.31
HDAC6-233ENST00000489352 F5P12259 2224 aa13.12□□□□□ -0.31
HDAC6-233ENST00000489352 CEACAM1P13688 526 aa13.12□□□□□ -0.31
HDAC6-233ENST00000489352 ITGB5P18084 799 aa13.12□□□□□ -0.31
HDAC6-233ENST00000489352 NT5C2P49902 561 aa13.12□□□□□ -0.31
HDAC6-233ENST00000489352 COL28A1Q2UY09 1125 aa13.12□□□□□ -0.31
HDAC6-233ENST00000489352 IFIT1BQ5T764 474 aaKnown RBP13.12□□□□□ -0.31
HDAC6-233ENST00000489352 TWF2Q6IBS0 349 aaKnown RBP13.12□□□□□ -0.31
HDAC6-233ENST00000489352 KIAA1211LQ6NV74 962 aa13.12□□□□□ -0.31
HDAC6-233ENST00000489352 USP17L6PQ6QN14 398 aa13.12□□□□□ -0.31
HDAC6-233ENST00000489352 ZNF710Q8N1W2 664 aa13.12□□□□□ -0.31
HDAC6-233ENST00000489352 LPPQ93052 612 aa13.12□□□□□ -0.31
HDAC6-233ENST00000489352 UBAC1Q9BSL1 405 aa13.12□□□□□ -0.31
HDAC6-233ENST00000489352 GPSM3Q9Y4H4 160 aa13.12□□□□□ -0.31
HDAC6-233ENST00000489352 C4orf47A7E2U8 309 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 EPN2O95208 641 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 PHKA2P46019 1235 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 CACNA2D4Q7Z3S7 1137 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 GLYCTKQ8IVS8 523 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 SPEM1Q8N4L4 309 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 ENAHQ8N8S7 591 aaPredicted RBP13.11□□□□□ -0.31
HDAC6-233ENST00000489352 ADAM32Q8TC27 787 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 FAM3CQ92520 227 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 EDEM2Q9BV94 578 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 VPS45Q9NRW7 570 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 HELLSQ9NRZ9 838 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 MSRB2Q9Y3D2 182 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 TICRRQ7Z2Z1 1910 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 NEDD4P46934 1319 aa13.11□□□□□ -0.31
HDAC6-233ENST00000489352 ZNF213O14771 459 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 TGM5O43548 720 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 XYLBO75191 536 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 ZMYND10O75800 440 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 C1RP00736 705 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 MS4A1P11836 297 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 RDXP35241 583 aaKnown RBP13.1□□□□□ -0.31
HDAC6-233ENST00000489352 PDXDC2PQ6P474 469 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 TRMT1LQ7Z2T5 733 aaKnown RBP13.1□□□□□ -0.31
HDAC6-233ENST00000489352 PROSER1Q86XN7 944 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 ZNF280BQ86YH2 543 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 TBC1D10CQ8IV04 446 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 PIBF1Q8WXW3 757 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 DNASE1L2Q92874 299 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 PGBD4Q96DM1 585 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 HERC2P3Q9BVR0 1158 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 CHMP4BQ9H444 224 aaKnown RBP13.1□□□□□ -0.31
HDAC6-233ENST00000489352 SMOC1Q9H4F8 434 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 BRD9Q9H8M2 597 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 JADE2Q9NQC1 790 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 CHST12Q9NRB3 414 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 MAD2L2Q9UI95 211 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 PCDHGA5Q9Y5G8 931 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 TTC41PQ6P2S7 1318 aa13.1□□□□□ -0.31
HDAC6-233ENST00000489352 TENM4Q6N022 2769 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 SHROOM3Q8TF72 1996 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 NRP1O14786 923 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 HYAL3O43820 417 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-233ENST00000489352 ECI2O75521 394 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 OFD1O75665 1012 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 PAPLNO95428 1278 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 CCDC192P0DO97 292 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 FGFR4P22455 802 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 KIF5BP33176 963 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 MPLP40238 635 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 NTHL1P78549 312 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 PDCD11Q14690 1871 aaKnown RBP13.09□□□□□ -0.31
HDAC6-233ENST00000489352 LIN9Q5TKA1 542 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 NLRP7Q8WX94 980 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 ZNF668Q96K58 619 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-233ENST00000489352 TMEM175Q9BSA9 504 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 RXFP1Q9HBX9 757 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 ZNF302Q9NR11 478 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.09□□□□□ -0.31
HDAC6-233ENST00000489352 KANSL3Q9P2N6 904 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 DDX19BQ9UMR2 479 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 UBIAD1Q9Y5Z9 338 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 ZMYM6O95789 1325 aa13.09□□□□□ -0.31
HDAC6-233ENST00000489352 B4E1Z4 1266 aa13.08□□□□□ -0.32
HDAC6-233ENST00000489352 MAGEB2O15479 319 aa13.08□□□□□ -0.32
HDAC6-233ENST00000489352 NR1I2O75469 434 aa13.08□□□□□ -0.32
HDAC6-233ENST00000489352 RPP40O75818 363 aaKnown RBP13.08□□□□□ -0.32
HDAC6-233ENST00000489352 C22orf31O95567 290 aa13.08□□□□□ -0.32
HDAC6-233ENST00000489352 HNRNPA1P09651 372 aaKnown RBP eCLIP13.08□□□□□ -0.32
HDAC6-233ENST00000489352 OR1G1P47890 313 aa13.08□□□□□ -0.32
HDAC6-233ENST00000489352 CLCN3P51790 818 aa13.08□□□□□ -0.32
HDAC6-233ENST00000489352 LRRC32Q14392 662 aa13.08□□□□□ -0.32
HDAC6-233ENST00000489352 MCMDC2Q4G0Z9 681 aa13.08□□□□□ -0.32
HDAC6-233ENST00000489352 PPM1LQ5SGD2 360 aa13.08□□□□□ -0.32
HDAC6-233ENST00000489352 EFCAB12Q6NXP0 572 aa13.08□□□□□ -0.32
HDAC6-233ENST00000489352 TAS1R1Q7RTX1 841 aa13.08□□□□□ -0.32
HDAC6-233ENST00000489352 WDR5BQ86VZ2 330 aa13.08□□□□□ -0.32
HDAC6-233ENST00000489352 ITFG1Q8TB96 612 aa13.08□□□□□ -0.32
HDAC6-233ENST00000489352 RIOX1Q9H6W3 641 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms