RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 BDP1A6H8Y1 2624 aa23.43■■□□□ 1.34
LIME1-207ENST00000489212 NCLP19338 710 aaKnown RBP23.43■■□□□ 1.34
LIME1-207ENST00000489212 KCNA5P22460 613 aa23.43■■□□□ 1.34
LIME1-207ENST00000489212 AFF1P51825 1210 aaKnown RBP23.43■■□□□ 1.34
LIME1-207ENST00000489212 UBE3AQ05086 875 aa23.43■■□□□ 1.34
LIME1-207ENST00000489212 ZRSR1Q15695 479 aaKnown RBP23.43■■□□□ 1.34
LIME1-207ENST00000489212 NOMO2Q5JPE7 1267 aa23.43■■□□□ 1.34
LIME1-207ENST00000489212 HYIQ5T013 277 aa23.43■■□□□ 1.34
LIME1-207ENST00000489212 NOTUMQ6P988 496 aa23.43■■□□□ 1.34
LIME1-207ENST00000489212 GLB1LQ6UWU2 654 aa23.43■■□□□ 1.34
LIME1-207ENST00000489212 SNX21Q969T3 373 aa23.43■■□□□ 1.34
LIME1-207ENST00000489212 PGBD4Q96DM1 585 aa23.43■■□□□ 1.34
LIME1-207ENST00000489212 CCDC51Q96ER9 411 aa23.43■■□□□ 1.34
LIME1-207ENST00000489212 CSRNP2Q9H175 543 aa23.43■■□□□ 1.34
LIME1-207ENST00000489212 RNF39Q9H2S5 420 aa23.43■■□□□ 1.34
LIME1-207ENST00000489212 TBC1D13Q9NVG8 400 aa23.43■■□□□ 1.34
LIME1-207ENST00000489212 ERVFC1P60507 584 aa23.42■■□□□ 1.34
LIME1-207ENST00000489212 PLCB3Q01970 1234 aa23.42■■□□□ 1.34
LIME1-207ENST00000489212 RESTQ13127 1097 aa23.42■■□□□ 1.34
LIME1-207ENST00000489212 SF3A1Q15459 793 aaKnown RBP23.42■■□□□ 1.34
LIME1-207ENST00000489212 CDR2LQ86X02 465 aaPredicted RBP23.42■■□□□ 1.34
LIME1-207ENST00000489212 ADAMTS19Q8TE59 1207 aa23.42■■□□□ 1.34
LIME1-207ENST00000489212 PABPC5Q96DU9 382 aaKnown RBP23.42■■□□□ 1.34
LIME1-207ENST00000489212 RUSC1Q9BVN2 902 aa23.42■■□□□ 1.34
LIME1-207ENST00000489212 FZD8Q9H461 694 aa23.42■■□□□ 1.34
LIME1-207ENST00000489212 HES2Q9Y543 173 aa23.42■■□□□ 1.34
LIME1-207ENST00000489212 IPPQ9Y573 584 aa23.42■■□□□ 1.34
LIME1-207ENST00000489212 TTLL13PA6NNM8 815 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 B4GALT3O60512 393 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 BCAR1P56945 870 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 GRIN1Q05586 938 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 CTC1Q2NKJ3 1217 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 PPP4R3CPQ6ZMV5 832 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 ZBTB8OSQ8IWT0 167 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 SLC39A11Q8N1S5 342 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 RSPH1Q8WYR4 309 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 MRPS27Q92552 414 aaKnown RBP23.41■■□□□ 1.34
LIME1-207ENST00000489212 PLIN2Q99541 437 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 KIFC3Q9BVG8 833 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 NRDE2Q9H7Z3 1164 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 RSAD1Q9HA92 442 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 TLR9Q9NR96 1032 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 SPG21Q9NZD8 308 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 MTMR6Q9Y217 621 aa23.41■■□□□ 1.34
LIME1-207ENST00000489212 A0A1B0GUA9 196 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 NT5C1B-RDH14C9J2C7 533 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 FSCN2O14926 492 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 EDN1P05305 212 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 LTBRP36941 435 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 NAMPTP43490 491 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 NCBP1Q09161 790 aaKnown RBP23.4■■□□□ 1.34
LIME1-207ENST00000489212 FAM187BQ17R55 369 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 LEXMQ3ZCV2 418 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 RINT1Q6NUQ1 792 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 FAM173BQ6P4H8 233 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 C1orf186Q6ZWK4 172 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 TMEM173Q86WV6 379 aaPredicted RBP23.4■■□□□ 1.34
LIME1-207ENST00000489212 DAW1Q8N136 415 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 KIFAP3Q92845 792 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 NECAB3Q96P71 396 aaPredicted RBP23.4■■□□□ 1.34
LIME1-207ENST00000489212 CCDC113Q9H0I3 377 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 C2orf40Q9H1Z8 148 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 IGFLR1Q9H665 355 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 PRMT7Q9NVM4 692 aaPredicted RBP23.4■■□□□ 1.34
LIME1-207ENST00000489212 CLDND1Q9NY35 253 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 LZTS1Q9Y250 596 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 USP20Q9Y2K6 914 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 CLIC4Q9Y696 253 aa23.4■■□□□ 1.34
LIME1-207ENST00000489212 CNTNAP2Q9UHC6 1331 aa23.39■■□□□ 1.34
LIME1-207ENST00000489212 H3BQ06 376 aaPredicted RBP23.39■■□□□ 1.33
LIME1-207ENST00000489212 LINC01565O15544 149 aa23.39■■□□□ 1.33
LIME1-207ENST00000489212 ZC3H11AO75152 810 aaKnown RBP eCLIP23.39■■□□□ 1.33
LIME1-207ENST00000489212 BMP15O95972 392 aa23.39■■□□□ 1.33
LIME1-207ENST00000489212 ITGA4P13612 1032 aa23.39■■□□□ 1.33
LIME1-207ENST00000489212 PPM1AP35813 382 aa23.39■■□□□ 1.33
LIME1-207ENST00000489212 TMEM119Q4V9L6 283 aa23.39■■□□□ 1.33
LIME1-207ENST00000489212 EP400NLQ6ZTU2 488 aa23.39■■□□□ 1.33
LIME1-207ENST00000489212 ZNF280BQ86YH2 543 aa23.39■■□□□ 1.33
LIME1-207ENST00000489212 CNNM3Q8NE01 707 aa23.39■■□□□ 1.33
LIME1-207ENST00000489212 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.39■■□□□ 1.33
LIME1-207ENST00000489212 DEPTORQ8TB45 409 aa23.39■■□□□ 1.33
LIME1-207ENST00000489212 PRIMPOLQ96LW4 560 aa23.39■■□□□ 1.33
LIME1-207ENST00000489212 NXF3Q9H4D5 531 aaKnown RBP23.39■■□□□ 1.33
LIME1-207ENST00000489212 DNAJB4Q9UDY4 337 aa23.39■■□□□ 1.33
LIME1-207ENST00000489212 NCK2O43639 380 aa23.38■■□□□ 1.33
LIME1-207ENST00000489212 HIP1RO75146 1068 aa23.38■■□□□ 1.33
LIME1-207ENST00000489212 DDHD2O94830 711 aa23.38■■□□□ 1.33
LIME1-207ENST00000489212 NPTXRO95502 500 aa23.38■■□□□ 1.33
LIME1-207ENST00000489212 DLX2Q07687 328 aaPredicted RBP23.38■■□□□ 1.33
LIME1-207ENST00000489212 MAPK7Q13164 816 aa23.38■■□□□ 1.33
LIME1-207ENST00000489212 PPP2R5AQ15172 486 aa23.38■■□□□ 1.33
LIME1-207ENST00000489212 PTPAQ15257 358 aa23.38■■□□□ 1.33
LIME1-207ENST00000489212 SLC27A1Q6PCB7 646 aa23.38■■□□□ 1.33
LIME1-207ENST00000489212 CABP7Q86V35 215 aa23.38■■□□□ 1.33
LIME1-207ENST00000489212 MICAL1Q8TDZ2 1067 aa23.38■■□□□ 1.33
LIME1-207ENST00000489212 LRRC15Q8TF66 581 aa23.38■■□□□ 1.33
LIME1-207ENST00000489212 IFT74Q96LB3 600 aa23.38■■□□□ 1.33
LIME1-207ENST00000489212 AK8Q96MA6 479 aa23.38■■□□□ 1.33
LIME1-207ENST00000489212 UHRF1Q96T88 793 aaPredicted RBP23.38■■□□□ 1.33
LIME1-207ENST00000489212 GBP3Q9H0R5 595 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms