RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 ADAM15Q13444 863 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 GNL2Q13823 731 aaKnown RBP7.79□□□□□ -1.16
VPS50-218ENST00000485994 TFDP1Q14186 410 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 EMC2Q15006 297 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 FAM187BQ17R55 369 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 ARL6IP4Q66PJ3 421 aaKnown RBP7.79□□□□□ -1.16
VPS50-218ENST00000485994 HAUS3Q68CZ6 603 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 LRRC55Q6ZSA7 311 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 KSR1Q8IVT5 923 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 MICALL1Q8N3F8 863 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 KLHL23Q8NBE8 558 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 COLGALT1Q8NBJ5 622 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 MCPH1Q8NEM0 835 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 POF1BQ8WVV4 589 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 PPP2R3CQ969Q6 453 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 TMEM143Q96AN5 459 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 PGBD4Q96DM1 585 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 CCDC51Q96ER9 411 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 SCLT1Q96NL6 688 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 PPP1R16BQ96T49 567 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 MRPL9Q9BYD2 267 aaKnown RBP7.79□□□□□ -1.16
VPS50-218ENST00000485994 UBE2ZQ9H832 354 aaPredicted RBP7.79□□□□□ -1.16
VPS50-218ENST00000485994 UBN1Q9NPG3 1134 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 AGPAT5Q9NUQ2 364 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 KANSL3Q9P2N6 904 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 STK39Q9UEW8 545 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 PCDHGA10Q9Y5H3 936 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 XIRP2A4UGR9 3374 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 MUC3AQ02505 3323 aa7.79□□□□□ -1.16
VPS50-218ENST00000485994 ARID2Q68CP9 1835 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 KIAA1671Q9BY89 1806 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 ATG2AQ2TAZ0 1938 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 FSCN2O14926 492 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 INPPL1O15357 1258 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 SLC26A4O43511 780 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 MED24O75448 989 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 CSDE1O75534 798 aaKnown RBP7.78□□□□□ -1.16
VPS50-218ENST00000485994 OFD1O75665 1012 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 SRGAP2CP0DJJ0 459 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 FGFR1P11362 822 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 CYP11B2P19099 503 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 NCLP19338 710 aaKnown RBP7.78□□□□□ -1.16
VPS50-218ENST00000485994 ATP2B1P20020 1258 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 FGFR4P22455 802 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 GJB2P29033 226 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 PPM1AP35813 382 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 SKIV2LQ15477 1246 aaKnown RBP7.78□□□□□ -1.16
VPS50-218ENST00000485994 AMHR2Q16671 573 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 TCEAL5Q5H9L2 206 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 CLLU1OSQ5K130 101 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 HYIQ5T013 277 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 KCNT2Q6UVM3 1135 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 TMEM184AQ6ZMB5 413 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 CATSPER4Q7RTX7 472 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 RNF149Q8NC42 400 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.78□□□□□ -1.16
VPS50-218ENST00000485994 PIGOQ8TEQ8 1089 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 INTS4Q96HW7 963 aaKnown RBP7.78□□□□□ -1.16
VPS50-218ENST00000485994 ZNF668Q96K58 619 aaPredicted RBP7.78□□□□□ -1.16
VPS50-218ENST00000485994 PRIMPOLQ96LW4 560 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 NLRP4Q96MN2 994 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 CDCA3Q99618 268 aaPredicted RBP7.78□□□□□ -1.16
VPS50-218ENST00000485994 MINDY3Q9H8M7 445 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 ALG13Q9NP73 1137 aaKnown RBP7.78□□□□□ -1.16
VPS50-218ENST00000485994 NGRNQ9NPE2 291 aaKnown RBP7.78□□□□□ -1.16
VPS50-218ENST00000485994 FAM105AQ9NUU6 356 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 LRWD1Q9UFC0 647 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 PUF60Q9UHX1 559 aaKnown RBP7.78□□□□□ -1.16
VPS50-218ENST00000485994 KCNG1Q9UIX4 513 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 RABGEF1Q9UJ41 708 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 PCDHB6Q9Y5E3 794 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 COL4A4P53420 1690 aaPredicted RBP7.78□□□□□ -1.16
VPS50-218ENST00000485994 CNTNAP2Q9UHC6 1331 aa7.78□□□□□ -1.16
VPS50-218ENST00000485994 PLXNA4Q9HCM2 1894 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 ZMYM2Q9UBW7 1377 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 A0A1B0GUA9 196 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 GRXCR2A6NFK2 248 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 PPP1R3GB7ZBB8 358 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 TNFRSF10AO00220 468 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 GFRA3O60609 400 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 FGF18O76093 207 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 PDIA4P13667 645 aaKnown RBP7.77□□□□□ -1.17
VPS50-218ENST00000485994 PDCP20941 246 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 GLRA2P23416 452 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 DNAJB1P25685 340 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 LTBRP36941 435 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 ALDH7A1P49419 539 aaKnown RBP7.77□□□□□ -1.17
VPS50-218ENST00000485994 GATMP50440 423 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 ATP2C1P98194 919 aaPredicted RBP7.77□□□□□ -1.17
VPS50-218ENST00000485994 TFF2Q03403 129 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 KRT17Q04695 432 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 HYAL1Q12794 435 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 CAPSQ13938 189 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 ECM1Q16610 540 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 PAN2Q504Q3 1202 aaKnown RBP7.77□□□□□ -1.17
VPS50-218ENST00000485994 UBXN11Q5T124 520 aa7.77□□□□□ -1.17
VPS50-218ENST00000485994 LARP1BQ659C4 914 aaKnown RBP7.77□□□□□ -1.17
VPS50-218ENST00000485994 CDCA2Q69YH5 1023 aaPredicted RBP7.77□□□□□ -1.17
VPS50-218ENST00000485994 TWF2Q6IBS0 349 aaKnown RBP7.77□□□□□ -1.17
VPS50-218ENST00000485994 NOTUMQ6P988 496 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms