RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 BLOC1S3Q6QNY0 202 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 RNF19BQ6ZMZ0 732 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 CCDC73Q6ZRK6 1079 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 NPAS4Q8IUM7 802 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 KCTD17Q8N5Z5 321 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 KCNG4Q8TDN1 519 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 EPS8L1Q8TE68 723 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 PRPF31Q8WWY3 499 aaKnown RBP8.89□□□□□ -0.99
USP40-216ENST00000485943 ARNTL2Q8WYA1 636 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 TSC1Q92574 1164 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 PGBD4Q96DM1 585 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 BICD1Q96G01 975 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 SPATA32Q96LK8 384 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 ADAM2Q99965 735 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 HSD17B14Q9BPX1 270 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 PYM1Q9BRP8 204 aaKnown RBP8.89□□□□□ -0.99
USP40-216ENST00000485943 TIPINQ9BVW5 301 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 PBX4Q9BYU1 374 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 LRRC27Q9C0I9 530 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 ZNF576Q9H609 170 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 TSR3Q9UJK0 312 aaKnown RBP8.89□□□□□ -0.99
USP40-216ENST00000485943 MTMR6Q9Y217 621 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 NOC2LQ9Y3T9 749 aaKnown RBP8.89□□□□□ -0.99
USP40-216ENST00000485943 CLIC4Q9Y696 253 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 ARID2Q68CP9 1835 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 TET1Q8NFU7 2136 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 MYH15Q9Y2K3 1946 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 A0A087WWV3 80 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 POM121CA8CG34 1229 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 PP2D1A8MPX8 630 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 H0YCG3 227 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 SLC26A4O43511 780 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 EDIL3O43854 480 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 EYA4O95677 639 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 CA3P07451 260 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 DARSP14868 501 aaKnown RBP8.88□□□□□ -0.99
USP40-216ENST00000485943 CDC25AP30304 524 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 SARSP49591 514 aaKnown RBP8.88□□□□□ -0.99
USP40-216ENST00000485943 DEFB103AP81534 67 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 AMPD3Q01432 767 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 SPIRE1Q08AE8 756 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 MGAT3Q09327 533 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 RAD51AP2Q09MP3 1159 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 PCBP1Q15365 356 aaKnown RBP eCLIP8.88□□□□□ -0.99
USP40-216ENST00000485943 MAPK6Q16659 721 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 PAN2Q504Q3 1202 aaKnown RBP8.88□□□□□ -0.99
USP40-216ENST00000485943 NOTUMQ6P988 496 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 B3GNT9Q6UX72 402 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.88□□□□□ -0.99
USP40-216ENST00000485943 SLC24A5Q71RS6 500 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 SV2BQ7L1I2 683 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 C16orf59Q7L2K0 433 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 GPBP1Q86WP2 473 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 CEP57L1Q8IYX8 460 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 IGSF22Q8N9C0 903 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 URGCPQ8TCY9 931 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 WNT2BQ93097 391 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 CCDC47Q96A33 483 aaKnown RBP8.88□□□□□ -0.99
USP40-216ENST00000485943 RPS6KC1Q96S38 1066 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 TCHPQ9BT92 498 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 DHX33Q9H6R0 707 aaKnown RBP8.88□□□□□ -0.99
USP40-216ENST00000485943 CERS4Q9HA82 394 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 PRM3Q9NNZ6 103 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 KMT5AQ9NQR1 393 aa8.88□□□□□ -0.99
USP40-216ENST00000485943 LARSQ9P2J5 1176 aaKnown RBP8.88□□□□□ -0.99
USP40-216ENST00000485943 TFIP11Q9UBB9 837 aaKnown RBP8.88□□□□□ -0.99
USP40-216ENST00000485943 GOLGA8CPA6NN73 597 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 TBKBP1A7MCY6 615 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 ZBTB42B2RXF5 422 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 E9PMD0 336 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 K7ERI5 159 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 ZBTB39O15060 712 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 NR1I2O75469 434 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 CSDE1O75534 798 aaKnown RBP8.87□□□□□ -0.99
USP40-216ENST00000485943 GJB5O95377 273 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 YEATS4O95619 227 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 PLA2G4BP0C869 781 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 FGFR4P22455 802 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 AXLP30530 894 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 ABCD1P33897 745 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 CTNNB1P35222 781 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 EFNA5P52803 228 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 PRPF4BQ13523 1007 aaKnown RBP8.87□□□□□ -0.99
USP40-216ENST00000485943 TARBP2Q15633 366 aaKnown RBP8.87□□□□□ -0.99
USP40-216ENST00000485943 PTPROQ16827 1216 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 SPECC1Q5M775 1068 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 DESI1Q6ICB0 168 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 FAM173BQ6P4H8 233 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 EP400NLQ6ZTU2 488 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 FAM228AQ86W67 206 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 KSR1Q8IVT5 923 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 PDILTQ8N807 584 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 PPM1EQ8WY54 764 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 LARP4BQ92615 738 aaKnown RBP8.87□□□□□ -0.99
USP40-216ENST00000485943 PPP2R3CQ969Q6 453 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 THAP11Q96EK4 314 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 SAMD11Q96NU1 681 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 TGS1Q96RS0 853 aaKnown RBP8.87□□□□□ -0.99
USP40-216ENST00000485943 CTAGE1Q96RT6 745 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 USP28Q96RU2 1077 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms