RNA–Protein interactions for RNA: ENST00000483122.1

VTI1A-205, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 4

Gene VTI1A, Length 2,423 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-205ENST00000483122 BRAFP15056 766 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 IGHMBP2P38935 993 aaKnown RBP12.69□□□□□ -0.38
VTI1A-205ENST00000483122 RRP1BQ14684 758 aaKnown RBP12.69□□□□□ -0.38
VTI1A-205ENST00000483122 EXOC3L4Q17RC7 722 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 ZNF449Q6P9G9 518 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 TRIM74Q86UV6 250 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 TRIM73Q86UV7 250 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 SCFD1Q8WVM8 642 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 BICD1Q96G01 975 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 OCEL1Q9H607 264 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 SIX2Q9NPC8 291 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 INTUQ9ULD6 942 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 DIS3Q9Y2L1 958 aaKnown RBP12.69□□□□□ -0.38
VTI1A-205ENST00000483122 PCDHA2Q9Y5H9 948 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 USP17L3A6NCW0 530 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 USP17L4A6NCW7 530 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 SIGLEC16A6NMB1 481 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 TDP2O95551 362 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 FXR2P51116 673 aaKnown RBP eCLIP12.69□□□□□ -0.38
VTI1A-205ENST00000483122 POLGP54098 1239 aaPredicted RBP12.69□□□□□ -0.38
VTI1A-205ENST00000483122 JAM2P57087 298 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 RCN2Q14257 317 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 CCDC152Q4G0S7 254 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 PTF1AQ7RTS3 328 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 USP17L1Q7RTZ2 530 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 VPS36Q86VN1 386 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 CYP4X1Q8N118 509 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 KLHL23Q8NBE8 558 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 RFFLQ8WZ73 363 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 MAGEB18Q96M61 343 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 LBHD1Q9BQE6 289 aaPredicted RBP12.69□□□□□ -0.38
VTI1A-205ENST00000483122 PPP1R12CQ9BZL4 782 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 SEC63Q9UGP8 760 aaKnown RBP12.69□□□□□ -0.38
VTI1A-205ENST00000483122 PTPN22Q9Y2R2 807 aa12.69□□□□□ -0.38
VTI1A-205ENST00000483122 NCANO14594 1321 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 EP400Q96L91 3159 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 ALAS1P13196 640 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 MARCKSL1P49006 195 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 MKRN3Q13064 507 aaKnown RBP12.68□□□□□ -0.38
VTI1A-205ENST00000483122 ZNF568Q3ZCX4 644 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 LRRC23Q53EV4 343 aaPredicted RBP12.68□□□□□ -0.38
VTI1A-205ENST00000483122 WASHC2DQ5SRD0 308 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 CCDC137Q6PK04 289 aaKnown RBP12.68□□□□□ -0.38
VTI1A-205ENST00000483122 GLYCTKQ8IVS8 523 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 ATL2Q8NHH9 583 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 ART4Q93070 314 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 GJA10Q969M2 543 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 TRAPPC9Q96Q05 1148 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 PITPNM3Q9BZ71 974 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.68□□□□□ -0.38
VTI1A-205ENST00000483122 PARP2Q9UGN5 583 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 SCOCQ9UIL1 159 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 USP20Q9Y2K6 914 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 ATP8B3O60423 1300 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 CETN3O15182 167 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 EDIL3O43854 480 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 ATP9AO75110 1047 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 ATP5HO75947 161 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 CBX6O95503 412 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 NR2F2P24468 414 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 CHRNA3P32297 505 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 KCNJ1P48048 391 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 CHRNDQ07001 517 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 TMEM266Q2M3C6 531 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 ZC2HC1CQ53FD0 456 aaPredicted RBP12.68□□□□□ -0.38
VTI1A-205ENST00000483122 KRT79Q5XKE5 535 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 RFWD3Q6PCD5 774 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 CCNJLQ8IV13 435 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 ZC3H3Q8IXZ2 948 aaKnown RBP12.68□□□□□ -0.38
VTI1A-205ENST00000483122 SLC30A5Q8TAD4 765 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 MAIP1Q8WWC4 291 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 NRG4Q8WWG1 115 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 KRT35Q92764 455 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 INPP5DQ92835 1189 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 RUNDC3BQ96NL0 473 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 SERPINB12Q96P63 405 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 POP1Q99575 1024 aaKnown RBP12.68□□□□□ -0.38
VTI1A-205ENST00000483122 AAASQ9NRG9 546 aa12.68□□□□□ -0.38
VTI1A-205ENST00000483122 LAMB1P07942 1786 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 TCRBV7S2A1N4TA0A589 114 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 PODXLO00592 558 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 CETPP11597 493 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 CACNA2D1P54289 1103 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 CTTNQ14247 550 aaKnown RBP12.67□□□□□ -0.38
VTI1A-205ENST00000483122 PDIA5Q14554 519 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 SETDB1Q15047 1291 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 EPHA7Q15375 998 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 KHDC1Q4VXA5 237 aaKnown RBP12.67□□□□□ -0.38
VTI1A-205ENST00000483122 DCAF17Q5H9S7 520 aaPredicted RBP12.67□□□□□ -0.38
VTI1A-205ENST00000483122 CCDC125Q86Z20 511 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 ZNF526Q8TF50 670 aaPredicted RBP12.67□□□□□ -0.38
VTI1A-205ENST00000483122 DYNLL2Q96FJ2 89 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 LRRC27Q9C0I9 530 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 C6orf50Q9HD87 102 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 EMILIN3Q9NT22 766 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 DNAJC17Q9NVM6 304 aaKnown RBP12.67□□□□□ -0.38
VTI1A-205ENST00000483122 ARPP21Q9UBL0 812 aaPredicted RBP12.67□□□□□ -0.38
VTI1A-205ENST00000483122 TBK1Q9UHD2 729 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 PCYOX1Q9UHG3 505 aa12.67□□□□□ -0.38
VTI1A-205ENST00000483122 COG5Q9UP83 839 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms