RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 GPC3P51654 580 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 STX17P56962 302 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 PLCB2Q00722 1185 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 ADAM9Q13443 819 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 FILIP1LQ4L180 1135 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 ZC2HC1CQ53FD0 456 aaPredicted RBP11.14□□□□□ -0.63
USP39-215ENST00000481409 C1orf53Q5VUE5 145 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 USP37Q86T82 979 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 NELFCDQ8IXH7 590 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 GLIS3Q8NEA6 775 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 MED15Q96RN5 788 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 SRRTQ9BXP5 876 aaKnown RBP11.14□□□□□ -0.63
USP39-215ENST00000481409 FGFBP2Q9BYJ0 223 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 CCDC113Q9H0I3 377 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 FZD8Q9H461 694 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 AGPAT3Q9NRZ7 376 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 DMAC2Q9NW81 257 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 LIMA1Q9UHB6 759 aaKnown RBP11.14□□□□□ -0.63
USP39-215ENST00000481409 FRMD4BQ9Y2L6 1034 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 STYXL1Q9Y6J8 313 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 SQORQ9Y6N5 450 aa11.14□□□□□ -0.63
USP39-215ENST00000481409 ADGRA3Q8IWK6 1321 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 ARVCFO00192 962 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 HNRNPDLO14979 420 aaKnown RBP11.13□□□□□ -0.63
USP39-215ENST00000481409 TREHO43280 583 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 NR3C1P04150 777 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 SRGAP2CP0DJJ0 459 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 EPB41P11171 864 aaKnown RBP11.13□□□□□ -0.63
USP39-215ENST00000481409 NR2F2P24468 414 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 HOXD13P35453 343 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 PSMC2P35998 433 aaKnown RBP11.13□□□□□ -0.63
USP39-215ENST00000481409 GJA8P48165 433 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 LIG4P49917 911 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 CRYBB1P53674 252 aaPredicted RBP11.13□□□□□ -0.63
USP39-215ENST00000481409 PMS1P54277 932 aaKnown RBP11.13□□□□□ -0.63
USP39-215ENST00000481409 SOX10P56693 466 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 MCCD1P59942 119 aaPredicted RBP11.13□□□□□ -0.63
USP39-215ENST00000481409 IRX5P78411 483 aaPredicted RBP11.13□□□□□ -0.63
USP39-215ENST00000481409 DRP2Q13474 957 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 TCP11X2Q5H9J9 407 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 ARMCX5Q6P1M9 558 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 LRRC55Q6ZSA7 311 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.13□□□□□ -0.63
USP39-215ENST00000481409 FRMD5Q7Z6J6 570 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 CCDC155Q8N6L0 562 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 USP38Q8NB14 1042 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 NLRP7Q8WX94 980 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 VTI1AQ96AJ9 217 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 NLRP4Q96MN2 994 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 DEFB118Q96PH6 123 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 HSD3B7Q9H2F3 369 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 IFT122Q9HBG6 1241 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 ZMYM2Q9UBW7 1377 aa11.13□□□□□ -0.63
USP39-215ENST00000481409 TRIM49BA6NDI0 452 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 KCNJ18B7U540 433 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 GPR32O75388 356 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 TOM1L1O75674 476 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 SERPINC1P01008 464 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 PRKCBP05771 671 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 SFPQP23246 707 aaKnown RBP eCLIP11.12□□□□□ -0.63
USP39-215ENST00000481409 EIF4BP23588 611 aaKnown RBP11.12□□□□□ -0.63
USP39-215ENST00000481409 NLRP11P59045 1033 aaKnown RBP11.12□□□□□ -0.63
USP39-215ENST00000481409 MBTD1Q05BQ5 628 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 RBL2Q08999 1139 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 KCNJ12Q14500 433 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 MTFR1Q15390 333 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 PTGISQ16647 500 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 GDF6Q6KF10 455 aaPredicted RBP11.12□□□□□ -0.63
USP39-215ENST00000481409 TSHZ1Q6ZSZ6 1077 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 XXYLT1Q8NBI6 393 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 CAGE1Q8TC20 777 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 U2AF1L4Q8WU68 220 aaKnown RBP11.12□□□□□ -0.63
USP39-215ENST00000481409 CCDC51Q96ER9 411 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 BICD1Q96G01 975 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 MRFAP1L1Q96HT8 127 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 SCLT1Q96NL6 688 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 ADAMTS10Q9H324 1103 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 POLD4Q9HCU8 107 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 SAMSN1Q9NSI8 373 aaKnown RBP11.12□□□□□ -0.63
USP39-215ENST00000481409 NOD1Q9Y239 953 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 TNFSF13BQ9Y275 285 aa11.12□□□□□ -0.63
USP39-215ENST00000481409 GRIN2DO15399 1336 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 CNTNAP2Q9UHC6 1331 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 A0A087WZ62 844 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 INO80B-WBP1J3KQ70 363 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 TLR3O15455 904 aaKnown RBP11.11□□□□□ -0.63
USP39-215ENST00000481409 CLDN3O15551 220 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 STX10O60499 249 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 ERLIN2O94905 339 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 PARNO95453 639 aaKnown RBP11.11□□□□□ -0.63
USP39-215ENST00000481409 TFRCP02786 760 aaKnown RBP11.11□□□□□ -0.63
USP39-215ENST00000481409 VTNP04004 478 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 DARSP14868 501 aaKnown RBP11.11□□□□□ -0.63
USP39-215ENST00000481409 CDC25BP30305 580 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 CDK7P50613 346 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 UBASH3AP57075 661 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 CHMP4BP1P59074 171 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 MRPS6P82932 125 aaKnown RBP11.11□□□□□ -0.63
USP39-215ENST00000481409 FANCCQ00597 558 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 KCNA1Q09470 495 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms