RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 FAM13CQ8NE31 585 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 CALUO43852 315 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 PTDSS1P48651 473 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 DNAJC3Q13217 504 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 ORC2Q13416 577 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 RRP1BQ14684 758 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 NBPF20Q3BBV1 942 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 ARSHQ5FYA8 562 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 MFSD5Q6N075 450 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 ZNF746Q6NUN9 644 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 LRRC47Q8N1G4 583 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 PWWP2AQ96N64 755 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 TMEM109Q9BVC6 243 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 CYP39A1Q9NYL5 469 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 PRKAG3Q9UGI9 489 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 PASKQ96RG2 1323 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 CCNB1P14635 433 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 ATP5DP30049 168 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 PEX5P50542 639 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 CCNG1P51959 295 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 CCDC6Q16204 474 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 ERFEQ4G0M1 354 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 PARP10Q53GL7 1025 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 CYP4X1Q8N118 509 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 DNAJC9Q8WXX5 260 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 ROPN1BQ9BZX4 212 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 ROPN1Q9HAT0 212 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 LRRC42Q9Y546 428 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 KDM3AQ9Y4C1 1321 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 DLEC1Q9Y238 1755 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 RSPH10B2B2RC85 870 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 RSPH10BP0C881 870 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 ATP6V1C1P21283 382 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 CHKAP35790 457 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 PSMC6P62333 389 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 PPP1R15BQ5SWA1 713 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 FBXO33Q7Z6M2 555 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 SPOCK2Q92563 424 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 LRRC37BQ96QE4 947 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 KIAA1683Q9H0B3 1180 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 A0A1W2PRG0 241 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 THAP12O43422 761 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 MED24O75448 989 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 LGR5O75473 907 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 CBX6O95503 412 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 PYGMP11217 842 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 TNFAIP8L3Q5GJ75 292 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 ARHGEF18Q6ZSZ5 1173 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 TXNRD3Q86VQ6 643 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 CPNE8Q86YQ8 564 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 CCDC24Q8N4L8 307 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 SLC30A5Q8TAD4 765 aa20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 BSDC1Q9NW68 430 aaPredicted RBP20.15■□□□□ 0.82
CCDC88B-207ENST00000479965 PITPNM2Q9BZ72 1349 aa20.14■□□□□ 0.82
CCDC88B-207ENST00000479965 ATMINO43313 823 aaPredicted RBP20.14■□□□□ 0.82
CCDC88B-207ENST00000479965 COILP38432 576 aaPredicted RBP20.14■□□□□ 0.82
CCDC88B-207ENST00000479965 TRAF1Q13077 416 aa20.14■□□□□ 0.82
CCDC88B-207ENST00000479965 C1orf54Q8WWF1 131 aa20.14■□□□□ 0.82
CCDC88B-207ENST00000479965 DHX36Q9H2U1 1008 aaKnown RBP20.14■□□□□ 0.82
CCDC88B-207ENST00000479965 MTUS1Q9ULD2 1270 aa20.14■□□□□ 0.82
CCDC88B-207ENST00000479965 RAD21O60216 631 aa20.14■□□□□ 0.81
CCDC88B-207ENST00000479965 SPAG7O75391 227 aa20.14■□□□□ 0.81
CCDC88B-207ENST00000479965 DLATP10515 647 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-207ENST00000479965 ROR2Q01974 943 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-207ENST00000479965 UCMAQ8WVF2 138 aa20.14■□□□□ 0.81
CCDC88B-207ENST00000479965 ART4Q93070 314 aa20.14■□□□□ 0.81
CCDC88B-207ENST00000479965 BTBD6Q96KE9 485 aa20.14■□□□□ 0.81
CCDC88B-207ENST00000479965 SERPINB12Q96P63 405 aa20.14■□□□□ 0.81
CCDC88B-207ENST00000479965 REEP2Q9BRK0 252 aa20.14■□□□□ 0.81
CCDC88B-207ENST00000479965 TBC1D10AQ9BXI6 508 aa20.14■□□□□ 0.81
CCDC88B-207ENST00000479965 NCANO14594 1321 aa20.14■□□□□ 0.81
CCDC88B-207ENST00000479965 SPOPO43791 374 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 ECEL1O95672 775 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 COMTP21964 271 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 RPL13P26373 211 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 ANXA13P27216 316 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 HOXA7P31268 230 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 HOXD13P35453 343 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 CDK8P49336 464 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 MTFR1Q15390 333 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 CLEC10AQ8IUN9 316 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 TRIM4Q9C037 500 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 PCYOX1Q9UHG3 505 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 A0A1B0GUL6 1792 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 FOXN2P32314 431 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 RNF43Q68DV7 783 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 MFN1Q8IWA4 741 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 RDH13Q8NBN7 331 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 METTL14Q9HCE5 456 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 SLCO1B3Q9NPD5 702 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 TRAF3IP3Q9Y228 551 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 ANKRD62A6NC57 917 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 FTLP02792 175 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 TRIM49P0CI25 452 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 TRIM49CP0CI26 452 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 CYP4A11Q02928 519 aa20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 TRMT10CQ7L0Y3 403 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.13■□□□□ 0.81
CCDC88B-207ENST00000479965 NUP98P52948 1817 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms