RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 ARL6IP4Q66PJ3 421 aaKnown RBP5.37□□□□□ -1.55
CCDC39-204ENST00000476379 PALB2Q86YC2 1186 aa5.37□□□□□ -1.55
CCDC39-204ENST00000476379 CREG2Q8IUH2 290 aa5.37□□□□□ -1.55
CCDC39-204ENST00000476379 DTX3LQ8TDB6 740 aa5.37□□□□□ -1.55
CCDC39-204ENST00000476379 ZNF473Q8WTR7 871 aaKnown RBP5.37□□□□□ -1.55
CCDC39-204ENST00000476379 PRCCQ92733 491 aaPredicted RBP5.37□□□□□ -1.55
CCDC39-204ENST00000476379 ATXN7L3BQ96GX2 97 aa5.37□□□□□ -1.55
CCDC39-204ENST00000476379 PNMA5Q96PV4 448 aa5.37□□□□□ -1.55
CCDC39-204ENST00000476379 BLOC1S4Q9NUP1 217 aa5.37□□□□□ -1.55
CCDC39-204ENST00000476379 FGFR1OP2Q9NVK5 253 aa5.37□□□□□ -1.55
CCDC39-204ENST00000476379 MTMR4Q9NYA4 1195 aa5.37□□□□□ -1.55
CCDC39-204ENST00000476379 SEPT9Q9UHD8 586 aaPredicted RBP5.37□□□□□ -1.55
CCDC39-204ENST00000476379 IKBKGQ9Y6K9 419 aa5.37□□□□□ -1.55
CCDC39-204ENST00000476379 TRIOBPQ9H2D6 2365 aa5.37□□□□□ -1.55
CCDC39-204ENST00000476379 A0A087WUV0 522 aaPredicted RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 ENO4A6NNW6 628 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 TXNDC9O14530 226 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 SHBGP04278 402 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 GCKP35557 465 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 HSD17B3P37058 310 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 ERVK-9P63128 1117 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 OVGP1Q12889 678 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 FOXD4Q12950 439 aaPredicted RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 PPP2R5BQ15173 497 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 STRIP1Q5VSL9 837 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 KLHDC7AQ5VTJ3 777 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 SPOPLQ6IQ16 392 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 ARFGAP2Q8N6H7 521 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 FBXO25Q8TCJ0 367 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 LMBR1Q8WVP7 490 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 KLHL29Q96CT2 875 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 FAM213AQ9BRX8 229 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 ZMYND12Q9H0C1 365 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 DHX36Q9H2U1 1008 aaKnown RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 NKIRAS1Q9NYS0 192 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 TPX2Q9ULW0 747 aaKnown RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 FIS1Q9Y3D6 152 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 PDS5AQ29RF7 1337 aaKnown RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 A0A0G2JND7 137 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 PNMA6FA0A0J9YX94 578 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 ZBTB5O15062 677 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 EIF3HO15372 352 aaKnown RBP eCLIP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 PPP1R37O75864 691 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 SRGAP2CP0DJJ0 459 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 CHN1P15882 459 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 HNRNPH1P31943 449 aaKnown RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 HUNKP57058 714 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 KIAA1755Q5JYT7 1200 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 THNSL1Q8IYQ7 743 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 SCFD1Q8WVM8 642 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 AGBL1Q96MI9 1066 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 EIF2AK1Q9BQI3 630 aaKnown RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 CBWD1Q9BRT8 395 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 NT5C3AQ9H0P0 336 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 C12orf65Q9H3J6 166 aaKnown RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 MTUS1Q9ULD2 1270 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 PPP1R9AQ9ULJ8 1098 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 TRIM33Q9UPN9 1127 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 SGK1O00141 431 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 FOXN3O00409 490 aaPredicted RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 KLRC4O43908 158 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 BMP3P12645 472 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 MAN1A1P33908 653 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 DLG4P78352 724 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 RNASELQ05823 741 aaKnown RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 NPY5RQ15761 445 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 CC2D2BQ6DHV5 1058 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 UBL4BQ8N7F7 174 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 KRT35Q92764 455 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 MKNK1Q9BUB5 465 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 DDX23Q9BUQ8 820 aaKnown RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 CALN1Q9BXU9 219 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 LRRC27Q9C0I9 530 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 YIPF3Q9GZM5 350 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 IQCGQ9H095 443 aaKnown RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 SAE1Q9UBE0 346 aaPredicted RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 LRRD1A4D1F6 860 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 GRID2IPA4D2P6 1211 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 TCP11X1B4DZS4 312 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 RASGRF2O14827 1237 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 KRT10P13645 584 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 SCP2P22307 547 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 MAPK4P31152 587 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 GCLCP48506 637 aaPredicted RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 MXI1P50539 228 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 BASP1P80723 227 aaKnown RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 TFAMQ00059 246 aaKnown RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 KNOP1Q1ED39 458 aaKnown RBP5.36□□□□□ -1.55
CCDC39-204ENST00000476379 MIIPQ5JXC2 388 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 FAXCQ5TGI0 409 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 RUFY4Q6ZNE9 571 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 EFCAB13Q8IY85 973 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 SCYL3Q8IZE3 742 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 HVCN1Q96D96 273 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 ARHGEF26Q96DR7 871 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 CEP170P1Q96L14 293 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 LXNQ9BS40 222 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 SEMA4AQ9H3S1 761 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 PARVGQ9HBI0 331 aa5.36□□□□□ -1.55
CCDC39-204ENST00000476379 KBTBD4Q9NVX7 518 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms