RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SKIP12755 728 aa15.69■□□□□ 0.1
UPF3A-204ENST00000475218 XRCC6P12956 609 aaKnown RBP eCLIP15.69■□□□□ 0.1
UPF3A-204ENST00000475218 PPM1AP35813 382 aa15.69■□□□□ 0.1
UPF3A-204ENST00000475218 ORC2Q13416 577 aaPredicted RBP15.69■□□□□ 0.1
UPF3A-204ENST00000475218 MXD4Q14582 209 aaPredicted RBP15.69■□□□□ 0.1
UPF3A-204ENST00000475218 RABEP1Q15276 862 aa15.69■□□□□ 0.1
UPF3A-204ENST00000475218 GLB1LQ6UWU2 654 aa15.69■□□□□ 0.1
UPF3A-204ENST00000475218 PPP2R3CQ969Q6 453 aa15.69■□□□□ 0.1
UPF3A-204ENST00000475218 CPB2Q96IY4 423 aa15.69■□□□□ 0.1
UPF3A-204ENST00000475218 RNF39Q9H2S5 420 aa15.69■□□□□ 0.1
UPF3A-204ENST00000475218 INPP5FQ9Y2H2 1132 aa15.69■□□□□ 0.1
UPF3A-204ENST00000475218 PCDHB6Q9Y5E3 794 aa15.69■□□□□ 0.1
UPF3A-204ENST00000475218 B4GALT5O43286 388 aa15.68■□□□□ 0.1
UPF3A-204ENST00000475218 ZC3H11AO75152 810 aaKnown RBP eCLIP15.68■□□□□ 0.1
UPF3A-204ENST00000475218 COL9A1P20849 921 aa15.68■□□□□ 0.1
UPF3A-204ENST00000475218 RPA1P27694 616 aa15.68■□□□□ 0.1
UPF3A-204ENST00000475218 SLC11A1P49279 550 aa15.68■□□□□ 0.1
UPF3A-204ENST00000475218 IL17AQ16552 155 aa15.68■□□□□ 0.1
UPF3A-204ENST00000475218 TMEM184AQ6ZMB5 413 aa15.68■□□□□ 0.1
UPF3A-204ENST00000475218 FAM184AQ8NB25 1140 aa15.68■□□□□ 0.1
UPF3A-204ENST00000475218 BSNDQ8WZ55 320 aa15.68■□□□□ 0.1
UPF3A-204ENST00000475218 NFKBIZQ9BYH8 718 aa15.68■□□□□ 0.1
UPF3A-204ENST00000475218 POLR3FQ9H1D9 316 aaPredicted RBP15.68■□□□□ 0.1
UPF3A-204ENST00000475218 DBR1Q9UK59 544 aaKnown RBP15.68■□□□□ 0.1
UPF3A-204ENST00000475218 FAM86C2PA6NEL3 165 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 C2orf71A6NGG8 1288 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 TTLL13PA6NNM8 815 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 ARF4P18085 180 aaPredicted RBP15.67■□□□□ 0.1
UPF3A-204ENST00000475218 NCLP19338 710 aaKnown RBP15.67■□□□□ 0.1
UPF3A-204ENST00000475218 SSTR3P32745 418 aaPredicted RBP15.67■□□□□ 0.1
UPF3A-204ENST00000475218 TRAPPC10P48553 1259 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 SYCE2Q6PIF2 218 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 MAEAQ7L5Y9 396 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 MRPL43Q8N983 215 aaKnown RBP15.67■□□□□ 0.1
UPF3A-204ENST00000475218 IGSF21Q96ID5 467 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 TMX3Q96JJ7 454 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 CDCA3Q99618 268 aaPredicted RBP15.67■□□□□ 0.1
UPF3A-204ENST00000475218 LRFN3Q9BTN0 628 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 S1PR5Q9H228 398 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 NGRNQ9NPE2 291 aaKnown RBP15.67■□□□□ 0.1
UPF3A-204ENST00000475218 ENTPD7Q9NQZ7 604 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 PUF60Q9UHX1 559 aaKnown RBP15.67■□□□□ 0.1
UPF3A-204ENST00000475218 USP15Q9Y4E8 981 aaPredicted RBP15.67■□□□□ 0.1
UPF3A-204ENST00000475218 HES2Q9Y543 173 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 IPPQ9Y573 584 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 INO80B-WBP1J3KQ70 363 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 ALDH7A1P49419 539 aaKnown RBP15.67■□□□□ 0.1
UPF3A-204ENST00000475218 FXR2P51116 673 aaKnown RBP eCLIP15.67■□□□□ 0.1
UPF3A-204ENST00000475218 KRT17Q04695 432 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 TMC7Q7Z402 723 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 AUTS2Q8WXX7 1259 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 RSPH1Q8WYR4 309 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 SUSD6Q92537 303 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 PGBD4Q96DM1 585 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 C1QTNF1Q9BXJ1 281 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 ZBP1Q9H171 429 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 RSAD1Q9HA92 442 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 MIOSQ9NXC5 875 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 FAM50BQ9Y247 325 aa15.67■□□□□ 0.1
UPF3A-204ENST00000475218 INPPL1O15357 1258 aa15.66■□□□□ 0.1
UPF3A-204ENST00000475218 EDN1P05305 212 aa15.66■□□□□ 0.1
UPF3A-204ENST00000475218 TFDP1Q14186 410 aa15.66■□□□□ 0.1
UPF3A-204ENST00000475218 CDCA2Q69YH5 1023 aaPredicted RBP15.66■□□□□ 0.1
UPF3A-204ENST00000475218 CDR2LQ86X02 465 aaPredicted RBP15.66■□□□□ 0.1
UPF3A-204ENST00000475218 FEZF2Q8TBJ5 459 aa15.66■□□□□ 0.1
UPF3A-204ENST00000475218 GBP3Q9H0R5 595 aa15.66■□□□□ 0.1
UPF3A-204ENST00000475218 CSRNP2Q9H175 543 aa15.66■□□□□ 0.1
UPF3A-204ENST00000475218 CDH22Q9UJ99 828 aa15.66■□□□□ 0.1
UPF3A-204ENST00000475218 WDFY4Q6ZS81 3184 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 ERLIN2O94905 339 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 POMCP01189 267 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 AXLP30530 894 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 PTGDRQ13258 359 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 PCBP1Q15365 356 aaKnown RBP eCLIP15.65■□□□□ 0.1
UPF3A-204ENST00000475218 LLGL2Q6P1M3 1020 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 NOTUMQ6P988 496 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 DDX53Q86TM3 631 aaKnown RBP15.65■□□□□ 0.1
UPF3A-204ENST00000475218 IGSF22Q8N9C0 903 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 GSTCDQ8NEC7 633 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 ZFP42Q96MM3 310 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 TBC1D32Q96NH3 1257 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 NACC1Q96RE7 527 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 NXF3Q9H4D5 531 aaKnown RBP15.65■□□□□ 0.1
UPF3A-204ENST00000475218 POLD4Q9HCU8 107 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 CNTNAP2Q9UHC6 1331 aa15.65■□□□□ 0.1
UPF3A-204ENST00000475218 PP2D1A8MPX8 630 aa15.64■□□□□ 0.1
UPF3A-204ENST00000475218 GPR37L1O60883 481 aa15.64■□□□□ 0.1
UPF3A-204ENST00000475218 CLASP2O75122 1294 aaKnown RBP15.64■□□□□ 0.1
UPF3A-204ENST00000475218 EFEMP2O95967 443 aa15.64■□□□□ 0.1
UPF3A-204ENST00000475218 CYP11B2P19099 503 aa15.64■□□□□ 0.1
UPF3A-204ENST00000475218 SMC1AQ14683 1233 aaKnown RBP15.64■□□□□ 0.1
UPF3A-204ENST00000475218 ANKRD54Q6NXT1 300 aa15.64■□□□□ 0.1
UPF3A-204ENST00000475218 PADI6Q6TGC4 694 aa15.64■□□□□ 0.1
UPF3A-204ENST00000475218 VPS52Q8N1B4 723 aa15.64■□□□□ 0.1
UPF3A-204ENST00000475218 CCDC51Q96ER9 411 aa15.64■□□□□ 0.1
UPF3A-204ENST00000475218 TMEM169Q96HH4 297 aa15.64■□□□□ 0.1
UPF3A-204ENST00000475218 MARCH5Q9NX47 278 aa15.64■□□□□ 0.1
UPF3A-204ENST00000475218 USP20Q9Y2K6 914 aa15.64■□□□□ 0.1
UPF3A-204ENST00000475218 HCFC2Q9Y5Z7 792 aa15.64■□□□□ 0.1
UPF3A-204ENST00000475218 A0A1B0GUA9 196 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms