RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 LMAN1LQ9HAT1 526 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 RXFP1Q9HBX9 757 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 KLK13Q9UKR3 277 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 KCNH3Q9ULD8 1083 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 MTCL1Q9Y4B5 1905 aaKnown RBP9.19□□□□□ -0.94
USP54-211ENST00000474929 GSTTP1A0A1W2PQM5 241 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 ZNF316A6NFI3 1004 aaPredicted RBP9.19□□□□□ -0.94
USP54-211ENST00000474929 ZBTB5O15062 677 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 ATXN7O15265 892 aaPredicted RBP9.19□□□□□ -0.94
USP54-211ENST00000474929 MAFGO15525 162 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 HBP1O60381 514 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 ZMYND10O75800 440 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 RHOBTB1O94844 696 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 SSBP05455 408 aaKnown RBP eCLIP9.19□□□□□ -0.94
USP54-211ENST00000474929 PARP1P09874 1014 aaKnown RBP9.19□□□□□ -0.94
USP54-211ENST00000474929 KCNA2P16389 499 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 RAB27AP51159 221 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 MLLT6P55198 1093 aaPredicted RBP9.19□□□□□ -0.94
USP54-211ENST00000474929 PTGDRQ13258 359 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 HNRNPDQ14103 355 aaKnown RBP9.19□□□□□ -0.94
USP54-211ENST00000474929 KIZQ2M2Z5 673 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 NOMO2Q5JPE7 1267 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 RRP12Q5JTH9 1297 aaKnown RBP9.19□□□□□ -0.94
USP54-211ENST00000474929 IQCA1Q86XH1 822 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 ITPRIPQ8IWB1 547 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 TRMT2AQ8IZ69 625 aaKnown RBP9.19□□□□□ -0.94
USP54-211ENST00000474929 ZNF687Q8N1G0 1237 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 ZC3H10Q96K80 434 aaKnown RBP9.19□□□□□ -0.94
USP54-211ENST00000474929 FAM193BQ96PV7 902 aaPredicted RBP9.19□□□□□ -0.94
USP54-211ENST00000474929 MAP7D2Q96T17 732 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 KXD1Q9BQD3 176 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 RPP25Q9BUL9 199 aaKnown RBP9.19□□□□□ -0.94
USP54-211ENST00000474929 RNF41Q9H4P4 317 aaPredicted RBP9.19□□□□□ -0.94
USP54-211ENST00000474929 NRDE2Q9H7Z3 1164 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 KAT14Q9H8E8 782 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 BRD9Q9H8M2 597 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 JPH1Q9HDC5 661 aaPredicted RBP9.19□□□□□ -0.94
USP54-211ENST00000474929 GDE1Q9NZC3 331 aa9.19□□□□□ -0.94
USP54-211ENST00000474929 KALRNO60229 2985 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 CAPNS1P04632 268 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 KLRC1P26715 233 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 STAT5BP51692 787 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 SCAPQ12770 1279 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 WDR81Q562E7 1941 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 ZNF484Q5JVG2 852 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 DGKKQ5KSL6 1271 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 HEATR6Q6AI08 1181 aaKnown RBP9.18□□□□□ -0.94
USP54-211ENST00000474929 C11orf74Q86VG3 221 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 ZNF280BQ86YH2 543 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 KIAA0319LQ8IZA0 1049 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 FAM9BQ8IZU0 186 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 SYNPOQ8N3V7 929 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 BCL7CQ8WUZ0 217 aaPredicted RBP9.18□□□□□ -0.94
USP54-211ENST00000474929 CUL5Q93034 780 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 ELSPBP1Q96BH3 223 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 PGBD4Q96DM1 585 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 TRAIPQ9BWF2 469 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 JMJD4Q9H9V9 463 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 CHST12Q9NRB3 414 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 ECHDC1Q9NTX5 307 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 TBC1D13Q9NVG8 400 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 RTEL1Q9NZ71 1219 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 FNIP2Q9P278 1114 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 KANSL3Q9P2N6 904 aa9.18□□□□□ -0.94
USP54-211ENST00000474929 LNP1A1A4G5 178 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 SHISA7A6NL88 538 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 C2CD2LO14523 706 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 KHNYNO15037 678 aaKnown RBP9.17□□□□□ -0.94
USP54-211ENST00000474929 GAS2O43903 313 aaKnown RBP9.17□□□□□ -0.94
USP54-211ENST00000474929 CAVIN2O95810 425 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 ALDH2P05091 517 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 CHRNB1P11230 501 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 EIF4BP23588 611 aaKnown RBP9.17□□□□□ -0.94
USP54-211ENST00000474929 TMOD1P28289 359 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 SLC11A1P49279 550 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 DSG1Q02413 1049 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 LMAN2Q12907 356 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 MTMR1Q13613 665 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 FAM160B1Q5W0V3 765 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 PDXDC1Q6P996 788 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 RTL10Q7L3V2 364 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 GRASPQ7Z6J2 395 aaPredicted RBP9.17□□□□□ -0.94
USP54-211ENST00000474929 TRAPPC12Q8WVT3 735 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 HNRNPLLQ8WVV9 542 aaKnown RBP9.17□□□□□ -0.94
USP54-211ENST00000474929 ESR2Q92731 530 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 ZBTB10Q96DT7 871 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 APOL6Q9BWW8 343 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 VN1R3Q9BXE9 311 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 LRRCC1Q9C099 1032 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 CPVLQ9H3G5 476 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 SLC9A2Q9UBY0 812 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 CEP131Q9UPN4 1083 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 FAN1Q9Y2M0 1017 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 PIAS3Q9Y6X2 628 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 APC2O95996 2303 aa9.17□□□□□ -0.94
USP54-211ENST00000474929 ZMYM6O95789 1325 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 CNTNAP2Q9UHC6 1331 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 UPK3BL1B0FP48 263 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 UPK3BL2E5RIL1 263 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 TGM5O43548 720 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms