RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ZBP1Q9H171 429 aa20.94■□□□□ 0.94
CCDC88B-206ENST00000473405 ANKEF1Q9NU02 776 aa20.94■□□□□ 0.94
CCDC88B-206ENST00000473405 ARIH1Q9Y4X5 557 aaPredicted RBP20.94■□□□□ 0.94
CCDC88B-206ENST00000473405 TSPAN1O60635 241 aa20.93■□□□□ 0.94
CCDC88B-206ENST00000473405 SRGAP2BP0DMP2 458 aa20.93■□□□□ 0.94
CCDC88B-206ENST00000473405 RARRES1P49788 294 aa20.93■□□□□ 0.94
CCDC88B-206ENST00000473405 PTENP60484 403 aa20.93■□□□□ 0.94
CCDC88B-206ENST00000473405 CAPSQ13938 189 aa20.93■□□□□ 0.94
CCDC88B-206ENST00000473405 MXD4Q14582 209 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-206ENST00000473405 ZNF280BQ86YH2 543 aa20.93■□□□□ 0.94
CCDC88B-206ENST00000473405 IFNLR1Q8IU57 520 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-206ENST00000473405 PGBD4Q96DM1 585 aa20.93■□□□□ 0.94
CCDC88B-206ENST00000473405 KIF2CQ99661 725 aa20.93■□□□□ 0.94
CCDC88B-206ENST00000473405 PHF7Q9BWX1 381 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-206ENST00000473405 HCFC2Q9Y5Z7 792 aa20.93■□□□□ 0.94
CCDC88B-206ENST00000473405 CLASP2O75122 1294 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 DGAT1O75907 488 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 GALTP07902 379 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 SPATA31C1P0DKV0 1188 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 MCM7P33993 719 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 SLC11A1P49279 550 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 RNASELQ05823 741 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 AMHR2Q16671 573 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 DDX53Q86TM3 631 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 VPS52Q8N1B4 723 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 SMG8Q8ND04 991 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 PIGOQ8TEQ8 1089 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 AUTS2Q8WXX7 1259 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 APOL5Q9BWW9 433 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 GBP3Q9H0R5 595 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 RSAD1Q9HA92 442 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 CNTNAP2Q9UHC6 1331 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 DENND4AQ7Z401 1863 aa20.92■□□□□ 0.94
CCDC88B-206ENST00000473405 A0A087WWV3 80 aa20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 CARNS1A5YM72 827 aa20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 DDHD2O94830 711 aa20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 ERLIN2O94905 339 aa20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 NCLP19338 710 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 ARL2P36404 184 aa20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 MBTD1Q05BQ5 628 aa20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 POU5F1BQ06416 359 aa20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 PCBP1Q15365 356 aaKnown RBP eCLIP20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 URGCPQ8TCY9 931 aa20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 FAM122AQ96E09 287 aa20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 C8orf76Q96K31 380 aa20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 LLPHQ9BRT6 129 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 EIF2AQ9BY44 585 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 CDH22Q9UJ99 828 aa20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 IRAK3Q9Y616 596 aa20.91■□□□□ 0.94
CCDC88B-206ENST00000473405 ZDBF2Q9HCK1 2354 aa20.9■□□□□ 0.94
CCDC88B-206ENST00000473405 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.9■□□□□ 0.94
CCDC88B-206ENST00000473405 CTSAP10619 480 aa20.9■□□□□ 0.94
CCDC88B-206ENST00000473405 HOXB8P17481 243 aaPredicted RBP20.9■□□□□ 0.94
CCDC88B-206ENST00000473405 ATP2B1P20020 1258 aa20.9■□□□□ 0.94
CCDC88B-206ENST00000473405 GLRA2P23416 452 aa20.9■□□□□ 0.94
CCDC88B-206ENST00000473405 SAFBQ15424 915 aaKnown RBP eCLIP20.9■□□□□ 0.94
CCDC88B-206ENST00000473405 CASP10Q92851 521 aa20.9■□□□□ 0.94
CCDC88B-206ENST00000473405 CPB2Q96IY4 423 aa20.9■□□□□ 0.94
CCDC88B-206ENST00000473405 RPGRIP1Q96KN7 1286 aa20.9■□□□□ 0.94
CCDC88B-206ENST00000473405 NFKBIZQ9BYH8 718 aa20.9■□□□□ 0.94
CCDC88B-206ENST00000473405 IPPQ9Y573 584 aa20.9■□□□□ 0.94
CCDC88B-206ENST00000473405 INO80B-WBP1J3KQ70 363 aa20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 INPPL1O15357 1258 aa20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 USO1O60763 962 aaKnown RBP20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 MED24O75448 989 aa20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 CXCL14O95715 111 aa20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 AXLP30530 894 aa20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 TFDP1Q14186 410 aa20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 C8orf34Q49A92 452 aa20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 NOTUMQ6P988 496 aa20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 HFE2Q6ZVN8 426 aa20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 CATSPER3Q86XQ3 398 aa20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 FBXO18Q8NFZ0 1043 aa20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 CCDC51Q96ER9 411 aa20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 CCDC43Q96MW1 224 aaKnown RBP20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 POLR3FQ9H1D9 316 aaPredicted RBP20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 RNF39Q9H2S5 420 aa20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 FOXP1Q9H334 677 aaPredicted RBP20.89■□□□□ 0.93
CCDC88B-206ENST00000473405 USP34Q70CQ2 3546 aa20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 PLXNA3P51805 1871 aa20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 B4GALT5O43286 388 aa20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 POMCP01189 267 aa20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 XRCC6P12956 609 aaKnown RBP eCLIP20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 ARF4P18085 180 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 CA8P35219 290 aa20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 PTPN14Q15678 1187 aa20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 CNNM3Q8NE01 707 aa20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 EDAQ92838 391 aa20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 CSRNP2Q9H175 543 aa20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 TUFT1Q9NNX1 390 aa20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 GPRC5CQ9NQ84 441 aa20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 HES2Q9Y543 173 aa20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 C2orf16Q68DN1 1984 aa20.88■□□□□ 0.93
CCDC88B-206ENST00000473405 WDR87Q6ZQQ6 2873 aa20.87■□□□□ 0.93
CCDC88B-206ENST00000473405 ARL5CA6NH57 179 aa20.87■□□□□ 0.93
CCDC88B-206ENST00000473405 OR52Z1P0C646 297 aa20.87■□□□□ 0.93
CCDC88B-206ENST00000473405 ITGA4P13612 1032 aa20.87■□□□□ 0.93
CCDC88B-206ENST00000473405 ORC2Q13416 577 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-206ENST00000473405 POTEGQ6S5H5 508 aa20.87■□□□□ 0.93
CCDC88B-206ENST00000473405 TMEM175Q9BSA9 504 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms