RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	12.77	□□□□□ -0.37
CPNE1-222	ENST00000473373	HCST	Q9UBK5	93 aa		12.77	□□□□□ -0.37
CPNE1-222	ENST00000473373	DNM3	Q9UQ16	869 aa		12.77	□□□□□ -0.37
CPNE1-222	ENST00000473373	ARIH1	Q9Y4X5	557 aa	Predicted RBP	12.77	□□□□□ -0.37
CPNE1-222	ENST00000473373	PCDHB2	Q9Y5E7	798 aa		12.77	□□□□□ -0.37
CPNE1-222	ENST00000473373	TRIP11	Q15643	1979 aa		12.77	□□□□□ -0.37
CPNE1-222	ENST00000473373	CIT	O14578	2027 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	PI4K2B	G5E9Z4	385 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373		K7ELQ4	463 aa	Predicted RBP	12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	NCK2	O43639	380 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	ITGA4	P13612	1032 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	GLRA2	P23416	452 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	AXL	P30530	894 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	PRPH	P41219	470 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	NDUFV1	P49821	464 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	PTEN	P60484	403 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	PCBP1	Q15365	356 aa	Known RBP eCLIP	12.76	□□□□□ -0.37	1e-8	■■■■■ 45.6
CPNE1-222	ENST00000473373	CLLU1OS	Q5K130	101 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	KCNT2	Q6UVM3	1135 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	RBM23	Q86U06	439 aa	Known RBP	12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	CRIPAK	Q8N1N5	446 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	TMEM169	Q96HH4	297 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	PLIN2	Q99541	437 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	C2orf40	Q9H1Z8	148 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	MINDY3	Q9H8M7	445 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	RSAD1	Q9HA92	442 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	FAM50B	Q9Y247	325 aa		12.76	□□□□□ -0.37
CPNE1-222	ENST00000473373	PP2D1	A8MPX8	630 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	BMP15	O95972	392 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	CDC25A	P30304	524 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	ARL2	P36404	184 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	PBX3	P40426	434 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	ATP2C1	P98194	919 aa	Predicted RBP	12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	UBE3A	Q05086	875 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	NOMO2	Q5JPE7	1267 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	PLPP4	Q5VZY2	271 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	TMC7	Q7Z402	723 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	C4orf32	Q8N8J7	132 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	CNNM3	Q8NE01	707 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	SPPL3	Q8TCT6	385 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	RSPH1	Q8WYR4	309 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	CALML4	Q96GE6	196 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	RPS6KC1	Q96S38	1066 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	ADPGK	Q9BRR6	497 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	NT5C3A	Q9H0P0	336 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	SPG21	Q9NZD8	308 aa		12.75	□□□□□ -0.37
CPNE1-222	ENST00000473373	CNTNAP2	Q9UHC6	1331 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	CARNS1	A5YM72	827 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	SPDYE4	A6NLX3	237 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	CCDC169	A6NNP5	214 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	NT5C1B-RDH14	C9J2C7	533 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373		E9PMD0	336 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373		H3BQ06	376 aa	Predicted RBP	12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	TSPAN1	O60635	241 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	NPTXR	O95502	500 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	LINC00271	P0C7V0	271 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	SRGAP2B	P0DMP2	458 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	ATF7	P17544	494 aa	Predicted RBP	12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	CYP11B2	P19099	503 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	SSTR3	P32745	418 aa	Predicted RBP	12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	UBA7	P41226	1012 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	NRIP1	P48552	1158 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	MBTD1	Q05BQ5	628 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	CLUL1	Q15846	466 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	MAPK6	Q16659	721 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	ALYREF	Q86V81	257 aa	Known RBP	12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	CDR2L	Q86X02	465 aa	Predicted RBP	12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	GJD3	Q8N144	294 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	IGSF22	Q8N9C0	903 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	MRPS27	Q92552	414 aa	Known RBP	12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	KIFAP3	Q92845	792 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	PABPC5	Q96DU9	382 aa	Known RBP	12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	CCDC51	Q96ER9	411 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	TCF25	Q9BQ70	676 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	CWH43	Q9H720	699 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	TLE6	Q9H808	572 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	UBN1	Q9NPG3	1134 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	PRMT7	Q9NVM4	692 aa	Predicted RBP	12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	KANSL3	Q9P2N6	904 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	PARP2	Q9UGN5	583 aa		12.74	□□□□□ -0.37
CPNE1-222	ENST00000473373	NR1I2	O75469	434 aa		12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	EYA4	O95677	639 aa		12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	POMC	P01189	267 aa		12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	PRKCB	P05771	671 aa		12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	ARF4	P18085	180 aa	Predicted RBP	12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	IRS1	P35568	1242 aa		12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	NAMPT	P43490	491 aa		12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	BCAR1	P56945	870 aa		12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	CEBPZ	Q03701	1054 aa	Known RBP	12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	POU5F1B	Q06416	359 aa		12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	DMP1	Q13316	513 aa	Predicted RBP	12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	PRPF4B	Q13523	1007 aa	Known RBP	12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	CUL4A	Q13619	759 aa		12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	DHX8	Q14562	1220 aa	Known RBP	12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	ECM1	Q16610	540 aa		12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	ARL6IP4	Q66PJ3	421 aa	Known RBP	12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	PTCRA	Q6ISU1	281 aa	Predicted RBP	12.73	□□□□□ -0.37
CPNE1-222	ENST00000473373	PDE12	Q6L8Q7	609 aa	Known RBP	12.73	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms