RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 SOD2P04179 222 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 AK2P54819 239 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 PFKFB3Q16875 520 aaPredicted RBP20.71■□□□□ 0.91
SHH-205ENST00000472308 CYP26C1Q6V0L0 522 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 REXO1Q8N1G1 1221 aaKnown RBP20.71■□□□□ 0.91
SHH-205ENST00000472308 PJA1Q8NG27 643 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 TCEANC2Q96MN5 208 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 SH2D3AQ9BRG2 576 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 TMEM175Q9BSA9 504 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 HERC2P3Q9BVR0 1158 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 ZMYND12Q9H0C1 365 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 PCDHB2Q9Y5E7 798 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 CACNA1IQ9P0X4 2223 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 CFAP47Q6ZTR5 3102 aa20.71■□□□□ 0.91
SHH-205ENST00000472308 COL4A3Q01955 1670 aa20.7■□□□□ 0.91
SHH-205ENST00000472308 ANHXE9PGG2 379 aa20.7■□□□□ 0.9
SHH-205ENST00000472308 MSH4O15457 936 aa20.7■□□□□ 0.9
SHH-205ENST00000472308 URODP06132 367 aa20.7■□□□□ 0.9
SHH-205ENST00000472308 CDC42EP1Q00587 391 aa20.7■□□□□ 0.9
SHH-205ENST00000472308 HTR4Q13639 388 aa20.7■□□□□ 0.9
SHH-205ENST00000472308 MTERF2Q49AM1 385 aa20.7■□□□□ 0.9
SHH-205ENST00000472308 ZNF410Q86VK4 478 aa20.7■□□□□ 0.9
SHH-205ENST00000472308 KSR1Q8IVT5 923 aa20.7■□□□□ 0.9
SHH-205ENST00000472308 RNF168Q8IYW5 571 aaPredicted RBP20.7■□□□□ 0.9
SHH-205ENST00000472308 ST13P5Q8NFI4 369 aaPredicted RBP20.7■□□□□ 0.9
SHH-205ENST00000472308 URGCPQ8TCY9 931 aa20.7■□□□□ 0.9
SHH-205ENST00000472308 SMG7Q92540 1137 aaKnown RBP20.7■□□□□ 0.9
SHH-205ENST00000472308 GJA10Q969M2 543 aa20.7■□□□□ 0.9
SHH-205ENST00000472308 NIFKQ9BYG3 293 aaKnown RBP20.7■□□□□ 0.9
SHH-205ENST00000472308 UNC45AQ9H3U1 944 aa20.7■□□□□ 0.9
SHH-205ENST00000472308 SLC2A4RGQ9NR83 387 aa20.7■□□□□ 0.9
SHH-205ENST00000472308 SEPT9Q9UHD8 586 aaPredicted RBP20.7■□□□□ 0.9
SHH-205ENST00000472308 FAN1Q9Y2M0 1017 aa20.7■□□□□ 0.9
SHH-205ENST00000472308 GOLGA8AA7E2F4 631 aa20.69■□□□□ 0.9
SHH-205ENST00000472308 GOLGA8BA8MQT2 603 aa20.69■□□□□ 0.9
SHH-205ENST00000472308 GLUD1P00367 558 aa20.69■□□□□ 0.9
SHH-205ENST00000472308 ADH1AP07327 375 aa20.69■□□□□ 0.9
SHH-205ENST00000472308 LAMP2P13473 410 aa20.69■□□□□ 0.9
SHH-205ENST00000472308 DCLRE1AQ6PJP8 1040 aa20.69■□□□□ 0.9
SHH-205ENST00000472308 CATSPER4Q7RTX7 472 aa20.69■□□□□ 0.9
SHH-205ENST00000472308 MRPL10Q7Z7H8 261 aaKnown RBP20.69■□□□□ 0.9
SHH-205ENST00000472308 RHPN2Q8IUC4 686 aa20.69■□□□□ 0.9
SHH-205ENST00000472308 PGBD4Q96DM1 585 aa20.69■□□□□ 0.9
SHH-205ENST00000472308 RSAD1Q9HA92 442 aa20.69■□□□□ 0.9
SHH-205ENST00000472308 AGPAT5Q9NUQ2 364 aa20.69■□□□□ 0.9
SHH-205ENST00000472308 SUCLA2Q9P2R7 463 aaPredicted RBP20.69■□□□□ 0.9
SHH-205ENST00000472308 POMCP01189 267 aa20.68■□□□□ 0.9
SHH-205ENST00000472308 ALDH2P05091 517 aa20.68■□□□□ 0.9
SHH-205ENST00000472308 SPATA31D3P0C874 917 aa20.68■□□□□ 0.9
SHH-205ENST00000472308 EXOSC10Q01780 885 aaKnown RBP20.68■□□□□ 0.9
SHH-205ENST00000472308 UBXN11Q5T124 520 aa20.68■□□□□ 0.9
SHH-205ENST00000472308 KIAA0319Q5VV43 1072 aa20.68■□□□□ 0.9
SHH-205ENST00000472308 SPATA31D4Q6ZUB0 917 aa20.68■□□□□ 0.9
SHH-205ENST00000472308 SLC5A5Q92911 643 aa20.68■□□□□ 0.9
SHH-205ENST00000472308 NLRP4Q96MN2 994 aa20.68■□□□□ 0.9
SHH-205ENST00000472308 RIT2Q99578 217 aa20.68■□□□□ 0.9
SHH-205ENST00000472308 INO80BQ9C086 356 aaPredicted RBP20.68■□□□□ 0.9
SHH-205ENST00000472308 IFT122Q9HBG6 1241 aa20.68■□□□□ 0.9
SHH-205ENST00000472308 RXFP1Q9HBX9 757 aa20.68■□□□□ 0.9
SHH-205ENST00000472308 PRG3Q9Y2Y8 225 aaPredicted RBP20.68■□□□□ 0.9
SHH-205ENST00000472308 NUMBLQ9Y6R0 609 aa20.68■□□□□ 0.9
SHH-205ENST00000472308 F8W810 466 aa20.67■□□□□ 0.9
SHH-205ENST00000472308 GAS7O60861 476 aa20.67■□□□□ 0.9
SHH-205ENST00000472308 KINO60870 393 aaKnown RBP20.67■□□□□ 0.9
SHH-205ENST00000472308 SFNP31947 248 aa20.67■□□□□ 0.9
SHH-205ENST00000472308 JAK3P52333 1124 aa20.67■□□□□ 0.9
SHH-205ENST00000472308 STARD6P59095 220 aa20.67■□□□□ 0.9
SHH-205ENST00000472308 XKR3Q5GH77 459 aa20.67■□□□□ 0.9
SHH-205ENST00000472308 GET4Q7L5D6 327 aaPredicted RBP20.67■□□□□ 0.9
SHH-205ENST00000472308 RPP25Q9BUL9 199 aaKnown RBP20.67■□□□□ 0.9
SHH-205ENST00000472308 NT5C3AQ9H0P0 336 aa20.67■□□□□ 0.9
SHH-205ENST00000472308 MAFO75444 373 aaPredicted RBP20.66■□□□□ 0.9
SHH-205ENST00000472308 HOXA11P31270 313 aaPredicted RBP20.66■□□□□ 0.9
SHH-205ENST00000472308 ADD1P35611 737 aaKnown RBP20.66■□□□□ 0.9
SHH-205ENST00000472308 GLUD2P49448 558 aa20.66■□□□□ 0.9
SHH-205ENST00000472308 DNM2P50570 870 aa20.66■□□□□ 0.9
SHH-205ENST00000472308 LRCH2Q5VUJ6 765 aa20.66■□□□□ 0.9
SHH-205ENST00000472308 COLGALT2Q8IYK4 626 aa20.66■□□□□ 0.9
SHH-205ENST00000472308 FAM193BQ96PV7 902 aaPredicted RBP20.66■□□□□ 0.9
SHH-205ENST00000472308 C6orf50Q9HD87 102 aa20.66■□□□□ 0.9
SHH-205ENST00000472308 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.66■□□□□ 0.9
SHH-205ENST00000472308 DPP7Q9UHL4 492 aa20.66■□□□□ 0.9
SHH-205ENST00000472308 CNTNAP2Q9UHC6 1331 aa20.66■□□□□ 0.9
SHH-205ENST00000472308 CHD8Q9HCK8 2581 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 KLF18A0A0U1RQI7 1052 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 PSMD10O75832 226 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 ATXN1P54253 815 aaKnown RBP20.65■□□□□ 0.9
SHH-205ENST00000472308 DSG1Q02413 1049 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 ZNF528Q3MIS6 628 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 ELMSAN1Q6PJG2 1045 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 B3GNT9Q6UX72 402 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 HDAC7Q8WUI4 952 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 CCDC136Q96JN2 1154 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 ESYT1Q9BSJ8 1104 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 TEKT3Q9BXF9 490 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 MINDY3Q9H8M7 445 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 KANSL3Q9P2N6 904 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 SSX2IPQ9Y2D8 614 aa20.65■□□□□ 0.9
SHH-205ENST00000472308 PATJQ8NI35 1801 aa20.64■□□□□ 0.9
SHH-205ENST00000472308 TGM5O43548 720 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms