RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	PCGF6	Q9BYE7	350 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	OR10A2	Q9H208	303 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	GOLGA6A	Q9NYA3	693 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	ZBTB21	Q9ULJ3	1066 aa		5.03	□□□□□ -1.6
PTCD3-209	ENST00000472044	PMS2P1	A4D2B8	440 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	C2orf78	A6NCI8	922 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	KIF3B	O15066	747 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	MTSS1	O43312	755 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	C8A	P07357	584 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	ZNF888	P0CJ79	500 aa	Predicted RBP	5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	EDNRB	P24530	442 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	CTSS	P25774	331 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	KIR2DL3	P43628	341 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	WNT3A	P56704	352 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	CCT2	P78371	535 aa	Known RBP	5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	KIF23	Q02241	960 aa	Predicted RBP	5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	ADAM15	Q13444	863 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	ATAT1	Q5SQI0	421 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	USP30	Q70CQ3	517 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	PPM1N	Q8N819	430 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	RIN2	Q8WYP3	895 aa	Predicted RBP	5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	UIMC1	Q96RL1	719 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	ADI1	Q9BV57	179 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	SLC12A5	Q9H2X9	1139 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	JADE2	Q9NQC1	790 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	SAP30BP	Q9UHR5	308 aa	Known RBP	5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	SERPINB13	Q9UIV8	391 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	ZDHHC9	Q9Y397	364 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	IPP	Q9Y573	584 aa		5.02	□□□□□ -1.61
PTCD3-209	ENST00000472044	HTRA2	O43464	458 aa	Predicted RBP	5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	NOBOX	O60393	691 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	GSPT1	P15170	499 aa	Known RBP	5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	PDC	P20941	246 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	KCNC1	P48547	511 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	ADCY7	P51828	1080 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	HGFAC	Q04756	655 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	TCIRG1	Q13488	830 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	UBE3C	Q15386	1083 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	ZNF124	Q15973	351 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	VMAC	Q2NL98	169 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	GFOD2	Q3B7J2	385 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	MINDY4	Q4G0A6	757 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	GAGE13	Q4V321	117 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	B3GNT9	Q6UX72	402 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	ABHD15	Q6UXT9	468 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	RALYL	Q86SE5	291 aa	Known RBP	5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	C14orf80	Q86SX3	495 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	FAM124A	Q86V42	546 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	WDR75	Q8IWA0	830 aa	Known RBP	5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	NRG4	Q8WWG1	115 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	HOXB13	Q92826	284 aa	Predicted RBP	5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	TOX2	Q96NM4	488 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	SLC6A15	Q9H2J7	730 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	C14orf93	Q9H972	538 aa	Known RBP	5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	MSL2	Q9HCI7	577 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	NOB1	Q9ULX3	412 aa	Known RBP	5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	LIMCH1	Q9UPQ0	1083 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	SLC4A7	Q9Y6M7	1214 aa		5.01	□□□□□ -1.61
PTCD3-209	ENST00000472044	FAM171A2	A8MVW0	826 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	ARHGAP6	O43182	974 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	HSPA6	P17066	643 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	RRAD	P55042	308 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	ADAM8	P78325	824 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	HLTF	Q14527	1009 aa	Known RBP eCLIP	5	□□□□□ -1.61
PTCD3-209	ENST00000472044	TBR1	Q16650	682 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	MST1L	Q2TV78	715 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	USP45	Q70EL2	814 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	GPR155	Q7Z3F1	870 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	C1QL4	Q86Z23	238 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	KBTBD2	Q8IY47	623 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	5	□□□□□ -1.61
PTCD3-209	ENST00000472044	SLC35G2	Q8TBE7	412 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	GCDH	Q92947	438 aa	Predicted RBP	5	□□□□□ -1.61
PTCD3-209	ENST00000472044	HPS3	Q969F9	1004 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	CLIP3	Q96DZ5	547 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	GTPBP4	Q9BZE4	634 aa	Known RBP	5	□□□□□ -1.61
PTCD3-209	ENST00000472044	KIAA1683	Q9H0B3	1180 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	NMRK2	Q9NPI5	230 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	DMRT3	Q9NQL9	472 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	ANLN	Q9NQW6	1124 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	DNM3	Q9UQ16	869 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	PTPN22	Q9Y2R2	807 aa		5	□□□□□ -1.61
PTCD3-209	ENST00000472044	CCDC154	A6NI56	674 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	DBX1	A6NMT0	343 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	ERC2	O15083	957 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	AKR1B10	O60218	316 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	OFD1	O75665	1012 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	ALDH1A2	O94788	518 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	ENDOD1	O94919	500 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	GAST	P01350	101 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	JUN	P05412	331 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	VSIG10L2	P0DP72	767 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	ATF3	P18847	181 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	CFP	P27918	469 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	CRHR1	P34998	444 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	GJA9	P57773	515 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	UAP1L1	Q3KQV9	507 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	IFIT1B	Q5T764	474 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	LILRA6	Q6PI73	481 aa		4.99	□□□□□ -1.61

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