RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 TTC1Q99614 292 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 ASCC2Q9H1I8 757 aaPredicted RBP4.53□□□□□ -1.68
VPS50-210ENST00000471188 ATP8A2Q9NTI2 1148 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 ARPP21Q9UBL0 812 aaPredicted RBP4.53□□□□□ -1.68
VPS50-210ENST00000471188 CIDEBQ9UHD4 219 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 USP20Q9Y2K6 914 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 TMEM98Q9Y2Y6 226 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 TSC22D4Q9Y3Q8 395 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 FAM208AQ9UK61 1670 aaKnown RBP4.53□□□□□ -1.68
VPS50-210ENST00000471188 BAZ2BQ9UIF8 2168 aaKnown RBP4.53□□□□□ -1.68
VPS50-210ENST00000471188 A0A087WZG4 1122 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 A0A1W2PQJ5 194 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 WNT7AO00755 349 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 P4HA2O15460 535 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 TBX10O75333 385 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 IDH1O75874 414 aaKnown RBP4.53□□□□□ -1.68
VPS50-210ENST00000471188 OR6B1O95007 311 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 PGM3O95394 542 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 FGFR1OPO95684 399 aaKnown RBP4.53□□□□□ -1.68
VPS50-210ENST00000471188 IGKV5-2P06315 115 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 MYBP10242 640 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 NFKBIAP25963 317 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 CDK7P50613 346 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 PSMD7P51665 324 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 CCR3P51677 355 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 POLR2FP61218 127 aaKnown RBP4.53□□□□□ -1.68
VPS50-210ENST00000471188 OCRLQ01968 901 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 DNAJC3Q13217 504 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 PPP2R5CQ13362 524 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 TNIP1Q15025 636 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 KCTD21Q4G0X4 260 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 EAPPQ56P03 285 aaPredicted RBP4.53□□□□□ -1.68
VPS50-210ENST00000471188 TTI2Q6NXR4 508 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 TMEM53Q6P2H8 277 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 PIK3AP1Q6ZUJ8 805 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 CROCCP2Q86T23 111 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 STKLD1Q8NE28 680 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 SCFD2Q8WU76 684 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 SLC35B4Q969S0 331 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 ZMAT2Q96NC0 199 aaKnown RBP4.53□□□□□ -1.68
VPS50-210ENST00000471188 ERGIC2Q96RQ1 377 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 PYM1Q9BRP8 204 aaKnown RBP4.53□□□□□ -1.68
VPS50-210ENST00000471188 TRAIPQ9BWF2 469 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 OXCT2Q9BYC2 517 aaPredicted RBP4.53□□□□□ -1.68
VPS50-210ENST00000471188 FAM217BQ9NTX9 383 aaPredicted RBP4.53□□□□□ -1.68
VPS50-210ENST00000471188 TBC1D7Q9P0N9 293 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 WNK3Q9BYP7 1800 aa4.53□□□□□ -1.68
VPS50-210ENST00000471188 A0A087X0T9 212 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 TMEM247A6NEH6 219 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 NEURL1BA8MQ27 555 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 GYG2O15488 501 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 ADCY3O60266 1144 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 DKC1O60832 514 aaKnown RBP eCLIP4.52□□□□□ -1.69
VPS50-210ENST00000471188 LDHAP00338 332 aaKnown RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 OAS1P00973 400 aaKnown RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 FAM228BP0C875 321 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 EEF2P13639 858 aaKnown RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 CCNE1P24864 410 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 SSTR3P32745 418 aaPredicted RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 EPS15P42566 896 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 CLCN2P51788 898 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 POLGP54098 1239 aaPredicted RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 ZBTB16Q05516 673 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 TCIRG1Q13488 830 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 THOC5Q13769 683 aaKnown RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 BTG3Q14201 252 aaPredicted RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 GCKRQ14397 625 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 WTAPQ15007 396 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 SH3D19Q5HYK7 790 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 FBXO31Q5XUX0 539 aaPredicted RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 RNF43Q68DV7 783 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 CC2D2BQ6DHV5 1058 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 PDXDC2PQ6P474 469 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 C16orf87Q6PH81 154 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 SATL1Q86VE3 508 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 SRRM1Q8IYB3 904 aaKnown RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 NRG4Q8WWG1 115 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 APPBP2Q92624 585 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 HPS3Q969F9 1004 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 HSPBAP1Q96EW2 488 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 DHTKD1Q96HY7 919 aaPredicted RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 MPHOSPH6Q99547 160 aaKnown RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 DHX36Q9H2U1 1008 aaKnown RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 SLITRK6Q9H5Y7 841 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 CCDC134Q9H6E4 229 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 LY9Q9HBG7 655 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 ZFP69BQ9UJL9 534 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 WASF2Q9Y6W5 498 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.52□□□□□ -1.69
VPS50-210ENST00000471188 USP54Q70EL1 1684 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 STK36Q9NRP7 1315 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 CFAP69A5D8W1 941 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 PP2D1A8MPX8 630 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 C6orf229H3BNL8 230 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 DNAJC6O75061 913 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 DCTN3O75935 186 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 PSMG1O95456 288 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 ASMTLO95671 621 aa4.52□□□□□ -1.69
VPS50-210ENST00000471188 NUDT17P0C025 328 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms