RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 PPP2R3CQ969Q6 453 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 CCDC51Q96ER9 411 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 CDK5RAP3Q96JB5 506 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 IFT74Q96LB3 600 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 PLIN2Q99541 437 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 EIF2AQ9BY44 585 aaKnown RBP17.37■□□□□ 0.37
HDAC6-218ENST00000470942 TRIM6Q9C030 488 aaPredicted RBP17.37■□□□□ 0.37
HDAC6-218ENST00000470942 CSRNP2Q9H175 543 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 C2orf40Q9H1Z8 148 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 RSAD1Q9HA92 442 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 CLDND1Q9NY35 253 aa17.37■□□□□ 0.37
HDAC6-218ENST00000470942 PUF60Q9UHX1 559 aaKnown RBP17.37■□□□□ 0.37
HDAC6-218ENST00000470942 B4GALT5O43286 388 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 BMP1P13497 986 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 LIG1P18858 919 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 NCLP19338 710 aaKnown RBP17.36■□□□□ 0.37
HDAC6-218ENST00000470942 PPM1AP35813 382 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 KRT17Q04695 432 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 SF3A1Q15459 793 aaKnown RBP17.36■□□□□ 0.37
HDAC6-218ENST00000470942 TMEM132AQ24JP5 1023 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 AGMOQ6ZNB7 445 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 CDR2LQ86X02 465 aaPredicted RBP17.36■□□□□ 0.37
HDAC6-218ENST00000470942 URGCPQ8TCY9 931 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 ADAMTS19Q8TE59 1207 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 RSPH1Q8WYR4 309 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 KIFAP3Q92845 792 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 SNX21Q969T3 373 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 GBP3Q9H0R5 595 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 TLR9Q9NR96 1032 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 PRMT7Q9NVM4 692 aaPredicted RBP17.36■□□□□ 0.37
HDAC6-218ENST00000470942 SPG21Q9NZD8 308 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 IPPQ9Y573 584 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 CNTNAP2Q9UHC6 1331 aa17.36■□□□□ 0.37
HDAC6-218ENST00000470942 MYH11P35749 1972 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 NT5C1B-RDH14C9J2C7 533 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 NCK2O43639 380 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 ZC3H11AO75152 810 aaKnown RBP eCLIP17.35■□□□□ 0.37
HDAC6-218ENST00000470942 NPTXRO95502 500 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 SSBP05455 408 aaKnown RBP eCLIP17.35■□□□□ 0.37
HDAC6-218ENST00000470942 NAMPTP43490 491 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 ALDH7A1P49419 539 aaKnown RBP17.35■□□□□ 0.37
HDAC6-218ENST00000470942 BCAR1P56945 870 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 PLCB3Q01970 1234 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 HYAL1Q12794 435 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 CDCA2Q69YH5 1023 aaPredicted RBP17.35■□□□□ 0.37
HDAC6-218ENST00000470942 KCNK18Q7Z418 384 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 ADGRD2Q7Z7M1 963 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 CABP7Q86V35 215 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 HSCBQ8IWL3 235 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 SMG8Q8ND04 991 aaKnown RBP17.35■□□□□ 0.37
HDAC6-218ENST00000470942 MRPS27Q92552 414 aaKnown RBP17.35■□□□□ 0.37
HDAC6-218ENST00000470942 PABPC5Q96DU9 382 aaKnown RBP17.35■□□□□ 0.37
HDAC6-218ENST00000470942 PNMA5Q96PV4 448 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 APOL6Q9BWW8 343 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 NT5C3AQ9H0P0 336 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 UBN1Q9NPG3 1134 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 TBC1D13Q9NVG8 400 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 PCDHGC5Q9Y5F6 944 aa17.35■□□□□ 0.37
HDAC6-218ENST00000470942 XIRP2A4UGR9 3374 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 TDRD15B5MCY1 1934 aaKnown RBP17.34■□□□□ 0.37
HDAC6-218ENST00000470942 PRKCBP05771 671 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 GTF2F1P35269 517 aaKnown RBP eCLIP17.34■□□□□ 0.372e-8■■■■■ 34.1
HDAC6-218ENST00000470942 UBA7P41226 1012 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 ERVFC1P60507 584 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 RESTQ13127 1097 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 MAPK6Q16659 721 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 HYIQ5T013 277 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 RINT1Q6NUQ1 792 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 SLC27A1Q6PCB7 646 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 PPP4R3CPQ6ZMV5 832 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 RBM23Q86U06 439 aaKnown RBP17.34■□□□□ 0.37
HDAC6-218ENST00000470942 HACE1Q8IYU2 909 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 SLC39A11Q8N1S5 342 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 PRIMPOLQ96LW4 560 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 AK8Q96MA6 479 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 FAM193BQ96PV7 902 aaPredicted RBP17.34■□□□□ 0.37
HDAC6-218ENST00000470942 RUSC1Q9BVN2 902 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 FZD8Q9H461 694 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 NRDE2Q9H7Z3 1164 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 ENTPD7Q9NQZ7 604 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 LZTS1Q9Y250 596 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 HES2Q9Y543 173 aa17.34■□□□□ 0.37
HDAC6-218ENST00000470942 A0A1B0GUA9 196 aa17.33■□□□□ 0.36
HDAC6-218ENST00000470942 CCDC169A6NNP5 214 aa17.33■□□□□ 0.36
HDAC6-218ENST00000470942 H3BQ06 376 aaPredicted RBP17.33■□□□□ 0.36
HDAC6-218ENST00000470942 HIP1RO75146 1068 aa17.33■□□□□ 0.36
HDAC6-218ENST00000470942 POMCP01189 267 aa17.33■□□□□ 0.36
HDAC6-218ENST00000470942 HSP90AA1P07900 732 aaKnown RBP17.33■□□□□ 0.36
HDAC6-218ENST00000470942 NRIP1P48552 1158 aa17.33■□□□□ 0.36
HDAC6-218ENST00000470942 PRPF4BQ13523 1007 aaKnown RBP17.33■□□□□ 0.36
HDAC6-218ENST00000470942 FAM187BQ17R55 369 aa17.33■□□□□ 0.36
HDAC6-218ENST00000470942 LEXMQ3ZCV2 418 aa17.33■□□□□ 0.36
HDAC6-218ENST00000470942 PLPP4Q5VZY2 271 aa17.33■□□□□ 0.36
HDAC6-218ENST00000470942 PDE12Q6L8Q7 609 aaKnown RBP17.33■□□□□ 0.36
HDAC6-218ENST00000470942 FAM173BQ6P4H8 233 aa17.33■□□□□ 0.36
HDAC6-218ENST00000470942 RASSF8Q8NHQ8 419 aa17.33■□□□□ 0.36
HDAC6-218ENST00000470942 CALML4Q96GE6 196 aa17.33■□□□□ 0.36
HDAC6-218ENST00000470942 TMEM169Q96HH4 297 aa17.33■□□□□ 0.36
HDAC6-218ENST00000470942 UHRF1Q96T88 793 aaPredicted RBP17.33■□□□□ 0.36
HDAC6-218ENST00000470942 KIFC3Q9BVG8 833 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms