RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 LMBRD1Q9NUN5 540 aa13.9□□□□□ -0.18
SPTLC1-204ENST00000469778 RMND1Q9NWS8 449 aa13.9□□□□□ -0.18
SPTLC1-204ENST00000469778 EXOC7Q9UPT5 735 aa13.9□□□□□ -0.18
SPTLC1-204ENST00000469778 SLC4A7Q9Y6M7 1214 aa13.9□□□□□ -0.18
SPTLC1-204ENST00000469778 TANC1Q9C0D5 1861 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 A0A0U1RQF3 1178 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 SLC16A4O15374 487 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 TNRC18O15417 2968 aaPredicted RBP13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 TSPAN1O60635 241 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 GADD45BO75293 160 aaPredicted RBP13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 NR1I2O75469 434 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 MBD3O95983 291 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 SNRPFP62306 86 aaKnown RBP13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 HSP90AA2PQ14568 343 aaPredicted RBP13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 KCNB1Q14721 858 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 POSTNQ15063 836 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 OTOP2Q7RTS6 562 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 HACE1Q8IYU2 909 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 RNPC3Q96LT9 517 aaKnown RBP13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 ADAM2Q99965 735 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 MRPL4Q9BYD3 311 aaKnown RBP13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 TMX1Q9H3N1 280 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 TMEM206Q9H813 350 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 MINDY3Q9H8M7 445 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 LTBP2Q14767 1821 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 CNTNAP2Q9UHC6 1331 aa13.89□□□□□ -0.19
SPTLC1-204ENST00000469778 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 N4BP3O15049 544 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 HOXA2O43364 376 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 PRKCBP05771 671 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 LIG1P18858 919 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 HOXA11P31270 313 aaPredicted RBP13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 SARSP49591 514 aaKnown RBP13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 EHHADHQ08426 723 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 DPYDQ12882 1025 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 CUL4BQ13620 913 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 SHHQ15465 462 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 AMHR2Q16671 573 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 KYAT1Q16773 422 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 SLFN12LQ6IEE8 588 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 SPATA20Q8TB22 786 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 STAMQ92783 540 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 TOP1MTQ969P6 601 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 PGBD4Q96DM1 585 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 ZNF668Q96K58 619 aaPredicted RBP13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 FIZ1Q96SL8 496 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 ADPGKQ9BRR6 497 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 STRA6Q9BX79 667 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 POLD4Q9HCU8 107 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 UBN1Q9NPG3 1134 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 TBX20Q9UMR3 447 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 PIN4Q9Y237 131 aaKnown RBP13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 TNFSF13BQ9Y275 285 aa13.88□□□□□ -0.19
SPTLC1-204ENST00000469778 C9IYK1 514 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 K7ENM7 598 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 EIF3DO15371 548 aaKnown RBP eCLIP13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 TOM1L1O75674 476 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 PPP1R37O75864 691 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 PIGRP01833 764 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 RPN1P04843 607 aaKnown RBP13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 ARF4P18085 180 aaPredicted RBP13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 WDR5P61964 334 aaKnown RBP13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 CACNB1Q02641 598 aaPredicted RBP13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 COASYQ13057 564 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 FAM26FQ5R3K3 315 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 TWF2Q6IBS0 349 aaKnown RBP13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 SLC27A1Q6PCB7 646 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 CHRDL2Q6WN34 429 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 RTN4RL1Q86UN2 441 aaPredicted RBP13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 SFR1Q86XK3 245 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 NPAS4Q8IUM7 802 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 OSBPL7Q9BZF2 842 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 EXOC1Q9NV70 894 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 TMEM161AQ9NX61 479 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 CGNQ9P2M7 1197 aaKnown RBP13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 PCDHB7Q9Y5E2 793 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 UBE4BO95155 1302 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 ADGRA3Q8IWK6 1321 aa13.87□□□□□ -0.19
SPTLC1-204ENST00000469778 CARNS1A5YM72 827 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 ZBBXA8MT70 800 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 KIAA0391O15091 583 aaKnown RBP13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 CSDE1O75534 798 aaKnown RBP13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 RHOBTB3O94955 611 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 ATP2A2P16615 1042 aaKnown RBP13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 MCM4P33991 863 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 PPP1R2P41236 205 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 POU5F1Q01860 360 aaKnown RBP13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 TMEM132AQ24JP5 1023 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 DCAF4L1Q3SXM0 396 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 LRIT3Q3SXY7 679 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 TPRNQ4KMQ1 711 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 NT5DC1Q5TFE4 455 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 ATF7IP2Q5U623 682 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 MRPL10Q7Z7H8 261 aaKnown RBP13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 MAP4K3Q8IVH8 894 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 CRIPAKQ8N1N5 446 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 ZNF507Q8TCN5 953 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 ACCSQ96QU6 501 aa13.86□□□□□ -0.19
SPTLC1-204ENST00000469778 ACO2Q99798 780 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms