RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 EEPD1Q7L9B9 569 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 TMC7Q7Z402 723 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 FOXP4Q8IVH2 680 aaPredicted RBP6.09□□□□□ -1.43
HMGB1-207ENST00000468384 FBXO16Q8IX29 292 aaPredicted RBP6.09□□□□□ -1.43
HMGB1-207ENST00000468384 SPEM1Q8N4L4 309 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 MRPL43Q8N983 215 aaKnown RBP6.09□□□□□ -1.43
HMGB1-207ENST00000468384 OR6J1Q8NGC5 347 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 MRPS27Q92552 414 aaKnown RBP6.09□□□□□ -1.43
HMGB1-207ENST00000468384 STAMQ92783 540 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 MRRFQ96E11 262 aaKnown RBP6.09□□□□□ -1.43
HMGB1-207ENST00000468384 ARHGAP9Q9BRR9 750 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 DUSP15Q9H1R2 295 aaPredicted RBP6.09□□□□□ -1.43
HMGB1-207ENST00000468384 SFXN1Q9H9B4 322 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 LMAN1LQ9HAT1 526 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 CBX8Q9HC52 389 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 DNAAF2Q9NVR5 837 aaKnown RBP6.09□□□□□ -1.43
HMGB1-207ENST00000468384 DENND2AQ9ULE3 1009 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 APOBEC2Q9Y235 224 aaKnown RBP6.09□□□□□ -1.43
HMGB1-207ENST00000468384 PTPRBP23467 1997 aa6.09□□□□□ -1.43
HMGB1-207ENST00000468384 ACANP16112 2415 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 MYH13Q9UKX3 1938 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 VPS37CA5D8V6 355 aaPredicted RBP6.08□□□□□ -1.44
HMGB1-207ENST00000468384 ASB14A6NK59 587 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 ENPP3O14638 875 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 PRMT3O60678 531 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 FAM155BO75949 473 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 AKAP3O75969 853 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 DRD2P14416 443 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 ZNF16P17020 682 aaPredicted RBP6.08□□□□□ -1.44
HMGB1-207ENST00000468384 RHOQP17081 205 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 CNTN2Q02246 1040 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 KRT24Q2M2I5 525 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 PREPLQ4J6C6 727 aaPredicted RBP6.08□□□□□ -1.44
HMGB1-207ENST00000468384 KIAA1755Q5JYT7 1200 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 ATG9AQ7Z3C6 839 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 SLCO6A1Q86UG4 719 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 TRIM50Q86XT4 487 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 SPACA3Q8IXA5 215 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 ANKRD35Q8N283 1001 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 C1orf216Q8TAB5 229 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 SPATA20Q8TB22 786 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 DHX36Q9H2U1 1008 aaKnown RBP6.08□□□□□ -1.44
HMGB1-207ENST00000468384 WDR6Q9NNW5 1121 aaKnown RBP6.08□□□□□ -1.44
HMGB1-207ENST00000468384 STARD5Q9NSY2 213 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 HDAC6Q9UBN7 1215 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 DDX49Q9Y6V7 483 aaKnown RBP6.08□□□□□ -1.44
HMGB1-207ENST00000468384 BSNQ9UPA5 3926 aa6.08□□□□□ -1.44
HMGB1-207ENST00000468384 GPR75-ASB3A0A0A6YYF3 556 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 E9PAM4 449 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 PIK3R2O00459 728 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 VWA5AO00534 786 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 ATP9AO75110 1047 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 BMP3P12645 472 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 HLA-EP13747 358 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 MAP2K3P46734 347 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 ATP1A2P50993 1020 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 SEMG2Q02383 582 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 LMAN2Q12907 356 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 ELF2Q15723 593 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 IGFBP7Q16270 282 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 OCLNQ16625 522 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 TAF7LQ5H9L4 462 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 SPOUT1Q5T280 376 aaKnown RBP6.07□□□□□ -1.44
HMGB1-207ENST00000468384 ZNF746Q6NUN9 644 aaPredicted RBP6.07□□□□□ -1.44
HMGB1-207ENST00000468384 C15orf39Q6ZRI6 1047 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 REPS2Q8NFH8 660 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 CMASQ8NFW8 434 aaPredicted RBP6.07□□□□□ -1.44
HMGB1-207ENST00000468384 SLC22A17Q8WUG5 538 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 GLG1Q92896 1179 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 HIC2Q96JB3 615 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 CAMK1GQ96NX5 476 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 TRERF1Q96PN7 1200 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 SIN3AQ96ST3 1273 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 PI4K2AQ9BTU6 479 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 PHAXQ9H814 394 aaKnown RBP6.07□□□□□ -1.44
HMGB1-207ENST00000468384 ZNF395Q9H8N7 513 aaPredicted RBP6.07□□□□□ -1.44
HMGB1-207ENST00000468384 CPNE5Q9HCH3 593 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 TMPRSS4Q9NRS4 437 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 DOLKQ9UPQ8 538 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 RIPK3Q9Y572 518 aa6.07□□□□□ -1.44
HMGB1-207ENST00000468384 SIPA1L1O43166 1804 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 TTC3P53804 2025 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 KNTC1P50748 2209 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 CLUHO75153 1309 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 RAD50Q92878 1312 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 A0A1W2PRG0 241 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 A1L4Q6 167 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 RHOBTB1O94844 696 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 TMPRSS3P57727 454 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 PLCB3Q01970 1234 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 CCDC173Q0VFZ6 552 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 SMC1AQ14683 1233 aaKnown RBP6.06□□□□□ -1.44
HMGB1-207ENST00000468384 FBLN7Q53RD9 439 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 OXLD1Q5BKU9 147 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 CXXC5Q7LFL8 322 aaKnown RBP6.06□□□□□ -1.44
HMGB1-207ENST00000468384 NPAS4Q8IUM7 802 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 HDDC3Q8N4P3 179 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 C7orf31Q8N865 590 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 EXD3Q8N9H8 876 aa6.06□□□□□ -1.44
HMGB1-207ENST00000468384 COLGALT1Q8NBJ5 622 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms