RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	DEXI	O95424	95 aa		12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	CNP	P09543	421 aa	Known RBP	12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	DNM2	P50570	870 aa		12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	INF2	Q27J81	1249 aa		12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	ATAT1	Q5SQI0	421 aa		12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	ASTL	Q6HA08	431 aa	Predicted RBP	12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	TMC5	Q6UXY8	1006 aa		12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	CATSPER4	Q7RTX7	472 aa		12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	SMG8	Q8ND04	991 aa	Known RBP	12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	ZNF274	Q96GC6	653 aa	Predicted RBP	12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	PHF20	Q9BVI0	1012 aa		12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	IRF2BPL	Q9H1B7	796 aa		12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	SFXN1	Q9H9B4	322 aa		12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	DDX25	Q9UHL0	483 aa	Known RBP	12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	INPP5F	Q9Y2H2	1132 aa		12.51	□□□□□ -0.41
PTPN7-204	ENST00000462815	PRR23A	A6NEV1	266 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	NRP1	O14786	923 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	NCL	P19338	710 aa	Known RBP	12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	PSMA5	P28066	241 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	QARS	P47897	775 aa	Known RBP	12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	DSC1	Q08554	894 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	SSRP1	Q08945	709 aa	Known RBP	12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	NONO	Q15233	471 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	EARS2	Q5JPH6	523 aa	Known RBP	12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	PPP4R3A	Q6IN85	833 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	GALNT17	Q6IS24	598 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	TAS1R1	Q7RTX1	841 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	CABP7	Q86V35	215 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	PPFIBP1	Q86W92	1011 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	PLCD3	Q8N3E9	789 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	CMAS	Q8NFW8	434 aa	Predicted RBP	12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	PRPF31	Q8WWY3	499 aa	Known RBP	12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	LARP6	Q9BRS8	491 aa	Known RBP	12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	TMEM175	Q9BSA9	504 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	RHOBTB2	Q9BYZ6	727 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	GBP3	Q9H0R5	595 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	RSAD1	Q9HA92	442 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	XPNPEP1	Q9NQW7	623 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	DBR1	Q9UK59	544 aa	Known RBP	12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	KCNJ14	Q9UNX9	436 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	PPME1	Q9Y570	386 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815	CNTNAP2	Q9UHC6	1331 aa		12.5	□□□□□ -0.41
PTPN7-204	ENST00000462815		F8W810	466 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	ZBTB39	O15060	712 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	EPB41L2	O43491	1005 aa	Known RBP	12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	PI15	O43692	258 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	SOD2	P04179	222 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	CA8	P35219	290 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	CLCN5	P51795	746 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	LAMTOR4	Q0VGL1	99 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	AMHR2	Q16671	573 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	POTEG	Q6S5H5	508 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	C15orf39	Q6ZRI6	1047 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	KRT25	Q7Z3Z0	450 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	SRGAP1	Q7Z6B7	1085 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	C4orf19	Q8IY42	314 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	COLGALT2	Q8IYK4	626 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	TRIM22	Q8IYM9	498 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	OXER1	Q8TDS5	423 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	TMEM143	Q96AN5	459 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	PGBD4	Q96DM1	585 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	FAM20A	Q96MK3	541 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	JPH2	Q9BR39	696 aa	Predicted RBP	12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	HERC2P3	Q9BVR0	1158 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	RNF39	Q9H2S5	420 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	GJB4	Q9NTQ9	266 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	DUSP12	Q9UNI6	340 aa		12.49	□□□□□ -0.41
PTPN7-204	ENST00000462815	TSPAN1	O60635	241 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	POMC	P01189	267 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	P4HB	P07237	508 aa	Known RBP	12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	AOC1	P19801	751 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	RFC5	P40937	340 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	RNASEL	Q05823	741 aa	Known RBP	12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	SCRN1	Q12765	414 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	BMS1	Q14692	1282 aa	Known RBP	12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	EMC2	Q15006	297 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	LETM2	Q2VYF4	491 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	KIAA0319	Q5VV43	1072 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	CCDC149	Q6ZUS6	474 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	FERMT3	Q86UX7	667 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	GSTCD	Q8NEC7	633 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	PSPC1	Q8WXF1	523 aa	Known RBP	12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	SLC7A3	Q8WY07	619 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	TNFRSF25	Q93038	417 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	ZNF707	Q96C28	371 aa	Predicted RBP	12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	CEP170P1	Q96L14	293 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	RPS6KC1	Q96S38	1066 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	LXN	Q9BS40	222 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	EIF2A	Q9BY44	585 aa	Known RBP	12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	TM6SF1	Q9BZW5	370 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	KCNK12	Q9HB15	430 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	RXFP1	Q9HBX9	757 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	MIOS	Q9NXC5	875 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	RGL1	Q9NZL6	768 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	STK39	Q9UEW8	545 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	IPP	Q9Y573	584 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	GVINP1	Q7Z2Y8	2422 aa		12.48	□□□□□ -0.41
PTPN7-204	ENST00000462815	CACNA1A	O00555	2505 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	STK36	Q9NRP7	1315 aa		12.47	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms