RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 A0A0D9SFI3 127 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 RASSF10A6NK89 507 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 ZNF500O60304 480 aaPredicted RBP5.44□□□□□ -1.54
CSMD3-205ENST00000462254 ASLP04424 464 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 FGFR1P11362 822 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 IL1R1P14778 569 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 BPIP17213 487 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 HIBADHP31937 336 aaKnown RBP5.44□□□□□ -1.54
CSMD3-205ENST00000462254 NEK4P51957 841 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 ZNF280AP59817 542 aaPredicted RBP5.44□□□□□ -1.54
CSMD3-205ENST00000462254 TMPRSS15P98073 1019 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 IKZF1Q13422 519 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 KRT72Q14CN4 511 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 SEPT7Q16181 437 aaKnown RBP5.44□□□□□ -1.54
CSMD3-205ENST00000462254 NBPF9Q3BBW0 867 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 YOD1Q5VVQ6 348 aaPredicted RBP5.44□□□□□ -1.54
CSMD3-205ENST00000462254 TDRD10Q5VZ19 366 aaKnown RBP5.44□□□□□ -1.54
CSMD3-205ENST00000462254 TOGARAM2Q6ZUX3 1019 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 ZNF804AQ7Z570 1209 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 TMC3Q7Z5M5 1100 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 PPFIBP1Q86W92 1011 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 CPXCR1Q8N123 301 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 SPATA5Q8NB90 893 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 USP7Q93009 1102 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 FAM227BQ96M60 508 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 HERPUD2Q9BSE4 406 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 FSD1Q9BTV5 496 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 GPR62Q9BZJ7 368 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 CD209Q9NNX6 404 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 NGRNQ9NPE2 291 aaKnown RBP5.44□□□□□ -1.54
CSMD3-205ENST00000462254 PIH1D3Q9NQM4 214 aaKnown RBP5.44□□□□□ -1.54
CSMD3-205ENST00000462254 FAM86C1Q9NVL1 165 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 LUZP4Q9P127 313 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 SUCOQ9UBS9 1254 aaKnown RBP5.44□□□□□ -1.54
CSMD3-205ENST00000462254 IP6K2Q9UHH9 426 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 KCNH3Q9ULD8 1083 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 PCDHB10Q9UN67 800 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 JAG2Q9Y219 1238 aa5.44□□□□□ -1.54
CSMD3-205ENST00000462254 PDS5AQ29RF7 1337 aaKnown RBP5.44□□□□□ -1.54
CSMD3-205ENST00000462254 K7ESF4 209 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 ESR1P03372 595 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 FAM163BP0C2L3 166 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 FUT4P22083 530 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 TPP2P29144 1249 aaPredicted RBP5.43□□□□□ -1.54
CSMD3-205ENST00000462254 PRDX5P30044 214 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 PRELPP51888 382 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 RNF4P78317 190 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 ZP2Q05996 745 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 KIAA2012Q0VF49 1180 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 CHAF1AQ13111 956 aaPredicted RBP5.43□□□□□ -1.54
CSMD3-205ENST00000462254 NMIQ13287 307 aaPredicted RBP5.43□□□□□ -1.54
CSMD3-205ENST00000462254 PLCL1Q15111 1095 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 SAFBQ15424 915 aaKnown RBP eCLIP5.43□□□□□ -1.54
CSMD3-205ENST00000462254 GAB4Q2WGN9 574 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 SV2CQ496J9 727 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 ANO1Q5XXA6 986 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 THAP5Q7Z6K1 395 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 TPH2Q8IWU9 490 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 ANKRD42Q8N9B4 389 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 ZNF384Q8TF68 577 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 COG1Q8WTW3 980 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 TTC17Q96AE7 1141 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 SEC62Q99442 399 aaKnown RBP5.43□□□□□ -1.54
CSMD3-205ENST00000462254 EYA3Q99504 573 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 SYT17Q9BSW7 474 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 SLC13A1Q9BZW2 595 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 PRDM14Q9GZV8 571 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 MKRN2Q9H000 416 aaKnown RBP5.43□□□□□ -1.54
CSMD3-205ENST00000462254 DBNDD1Q9H9R9 158 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 CARS2Q9HA77 564 aaKnown RBP5.43□□□□□ -1.54
CSMD3-205ENST00000462254 MBNL3Q9NUK0 354 aaKnown RBP5.43□□□□□ -1.54
CSMD3-205ENST00000462254 ZNF214Q9UL59 606 aaPredicted RBP5.43□□□□□ -1.54
CSMD3-205ENST00000462254 DENND2AQ9ULE3 1009 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 GTF2A1LQ9UNN4 478 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 LUC7L2Q9Y383 392 aaKnown RBP5.43□□□□□ -1.54
CSMD3-205ENST00000462254 TNPO3Q9Y5L0 923 aaKnown RBP5.43□□□□□ -1.54
CSMD3-205ENST00000462254 SALL1Q9NSC2 1324 aa5.43□□□□□ -1.54
CSMD3-205ENST00000462254 MYH6P13533 1939 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 MYH4Q9Y623 1939 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 TCRBV5S4A2TA0A5A2 114 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 YDJCA8MPS7 323 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 M0R2C6 588 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 NEMP1O14524 444 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 SGSM2O43147 1006 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 PPIP5K2O43314 1243 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 ECE2O60344 883 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 EFCAB14O75071 495 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 FRAT2O75474 233 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-205ENST00000462254 IDH1O75874 414 aaKnown RBP5.42□□□□□ -1.54
CSMD3-205ENST00000462254 TP53P04637 393 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-205ENST00000462254 ADD2P35612 726 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 IGFALSP35858 605 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 FLT3P36888 993 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 PMS1P54277 932 aaKnown RBP5.42□□□□□ -1.54
CSMD3-205ENST00000462254 PPP2R2AP63151 447 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 AUHQ13825 339 aaKnown RBP5.42□□□□□ -1.54
CSMD3-205ENST00000462254 PTPN21Q16825 1174 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 ZNF792Q3KQV3 632 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 BBS9Q3SYG4 887 aa5.42□□□□□ -1.54
CSMD3-205ENST00000462254 GNPTABQ3T906 1256 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms