RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 DUSP6Q16828 381 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 NOMO2Q5JPE7 1267 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 CDCA2Q69YH5 1023 aaPredicted RBP13.37□□□□□ -0.27
USP40-210ENST00000454354 NOTUMQ6P988 496 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 EP400NLQ6ZTU2 488 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 CNNM3Q8NE01 707 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 NGRNQ9NPE2 291 aaKnown RBP13.37□□□□□ -0.27
USP40-210ENST00000454354 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.37□□□□□ -0.27
USP40-210ENST00000454354 CLEC1BQ9P126 229 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 PRKAG3Q9UGI9 489 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 PUF60Q9UHX1 559 aaKnown RBP13.37□□□□□ -0.27
USP40-210ENST00000454354 PCDHB6Q9Y5E3 794 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 STK24Q9Y6E0 443 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 MYH15Q9Y2K3 1946 aa13.37□□□□□ -0.27
USP40-210ENST00000454354 ZMYM2Q9UBW7 1377 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 INO80B-WBP1J3KQ70 363 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 INPPL1O15357 1258 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 MBTPS2O43462 519 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 EYA4O95677 639 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 ALDH7A1P49419 539 aaKnown RBP13.36□□□□□ -0.27
USP40-210ENST00000454354 NDUFV1P49821 464 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 KRT17Q04695 432 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 COASYQ13057 564 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 KCNC3Q14003 757 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 SMAD2Q15796 467 aaKnown RBP13.36□□□□□ -0.27
USP40-210ENST00000454354 LONRF3Q496Y0 759 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 PLPP4Q5VZY2 271 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 PPP4R3CPQ6ZMV5 832 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 SMG8Q8ND04 991 aaKnown RBP13.36□□□□□ -0.27
USP40-210ENST00000454354 MICAL1Q8TDZ2 1067 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 PRIMPOLQ96LW4 560 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 TCF25Q9BQ70 676 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 RAB34Q9BZG1 259 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 CSRNP2Q9H175 543 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 NRDE2Q9H7Z3 1164 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 TLE6Q9H808 572 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 RSAD1Q9HA92 442 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 CD320Q9NPF0 282 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 UBN1Q9NPG3 1134 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 GPRC5CQ9NQ84 441 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 ENTPD7Q9NQZ7 604 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 LRWD1Q9UFC0 647 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 CD207Q9UJ71 328 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 DENND4AQ7Z401 1863 aa13.36□□□□□ -0.27
USP40-210ENST00000454354 CITO14578 2027 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 MTCL1Q9Y4B5 1905 aaKnown RBP13.35□□□□□ -0.27
USP40-210ENST00000454354 ARHGEF35A5YM69 484 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 B4GALT3O60512 393 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 ZC3H11AO75152 810 aaKnown RBP eCLIP13.35□□□□□ -0.27
USP40-210ENST00000454354 ARF4P18085 180 aaPredicted RBP13.35□□□□□ -0.27
USP40-210ENST00000454354 CYP11B2P19099 503 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 CCT6AP40227 531 aaKnown RBP13.35□□□□□ -0.27
USP40-210ENST00000454354 ZP2Q05996 745 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 NCBP1Q09161 790 aaKnown RBP13.35□□□□□ -0.27
USP40-210ENST00000454354 CLUL1Q15846 466 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 ECM1Q16610 540 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 FAM187BQ17R55 369 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 RILPL1Q5EBL4 403 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 PADI6Q6TGC4 694 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 TMEM184AQ6ZMB5 413 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 RBM23Q86U06 439 aaKnown RBP13.35□□□□□ -0.27
USP40-210ENST00000454354 TMEM173Q86WV6 379 aaPredicted RBP13.35□□□□□ -0.27
USP40-210ENST00000454354 SMRP1Q8NCR6 262 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 VN1R2Q8NFZ6 395 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 URGCPQ8TCY9 931 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 TMEM169Q96HH4 297 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 CPB2Q96IY4 423 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 EIF2AQ9BY44 585 aaKnown RBP13.35□□□□□ -0.27
USP40-210ENST00000454354 INPP5FQ9Y2H2 1132 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 IPPQ9Y573 584 aa13.35□□□□□ -0.27
USP40-210ENST00000454354 PDCD11Q14690 1871 aaKnown RBP13.35□□□□□ -0.27
USP40-210ENST00000454354 PLXNA3P51805 1871 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 LRRIQ4A6NIV6 560 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 C19orf67A6NJJ6 358 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 HIDE1A8MVS5 230 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 NT5C1B-RDH14C9J2C7 533 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 PER2O15055 1255 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 GALTP07902 379 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 ITGA4P13612 1032 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 ATP2C1P98194 919 aaPredicted RBP13.34□□□□□ -0.27
USP40-210ENST00000454354 RNASELQ05823 741 aaKnown RBP13.34□□□□□ -0.27
USP40-210ENST00000454354 SMC1AQ14683 1233 aaKnown RBP13.34□□□□□ -0.27
USP40-210ENST00000454354 IL17AQ16552 155 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 SLC27A1Q6PCB7 646 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 TMC7Q7Z402 723 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 ZNF280BQ86YH2 543 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 ADHFE1Q8IWW8 467 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 GJD3Q8N144 294 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 SNX29Q8TEQ0 813 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 BCL7CQ8WUZ0 217 aaPredicted RBP13.34□□□□□ -0.27
USP40-210ENST00000454354 BSNDQ8WZ55 320 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 IGSF21Q96ID5 467 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 ZBP1Q9H171 429 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 C2orf40Q9H1Z8 148 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 FZD8Q9H461 694 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 PRMT7Q9NVM4 692 aaPredicted RBP13.34□□□□□ -0.27
USP40-210ENST00000454354 KANSL3Q9P2N6 904 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 DNAJB4Q9UDY4 337 aa13.34□□□□□ -0.27
USP40-210ENST00000454354 BARX2Q9UMQ3 279 aaPredicted RBP13.34□□□□□ -0.27
USP40-210ENST00000454354 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms