RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 SGMS1Q86VZ5 419 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 CXorf67Q86X51 503 aaPredicted RBP4.71□□□□□ -1.66
VPS41-207ENST00000439468 PHYKPLQ8IUZ5 450 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 ZZZ3Q8IYH5 903 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 GPR135Q8IZ08 494 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 D2HGDHQ8N465 521 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 GFM2Q969S9 779 aaKnown RBP4.71□□□□□ -1.66
VPS41-207ENST00000439468 SLC7A6OSQ96CW6 309 aaPredicted RBP4.71□□□□□ -1.66
VPS41-207ENST00000439468 RPL10LQ96L21 214 aaKnown RBP4.71□□□□□ -1.66
VPS41-207ENST00000439468 MENTQ9BUN1 341 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 RTFDC1Q9BY42 306 aaPredicted RBP4.71□□□□□ -1.66
VPS41-207ENST00000439468 CSRNP2Q9H175 543 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 NELFAQ9H3P2 528 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 POLR3BQ9NW08 1133 aaPredicted RBP4.71□□□□□ -1.66
VPS41-207ENST00000439468 PLA2G3Q9NZ20 509 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 KCMF1Q9P0J7 381 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 SRRDQ9UH36 339 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 IP6K2Q9UHH9 426 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 SYNPO2Q9UMS6 1093 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 PPP2R3BQ9Y5P8 575 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 WASHC2AQ641Q2 1341 aa4.71□□□□□ -1.66
VPS41-207ENST00000439468 CAPN14A8MX76 684 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 MAFGO15525 162 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 PRPF3O43395 683 aaKnown RBP4.7□□□□□ -1.66
VPS41-207ENST00000439468 MAFO75444 373 aaPredicted RBP4.7□□□□□ -1.66
VPS41-207ENST00000439468 MANFP55145 182 aaKnown RBP4.7□□□□□ -1.66
VPS41-207ENST00000439468 BCAR1P56945 870 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 ANTXR2P58335 489 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 BPIFB4P59827 614 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 SRSF2Q01130 221 aaKnown RBP4.7□□□□□ -1.66
VPS41-207ENST00000439468 HGFACQ04756 655 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 FOXL1Q12952 345 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 TCIRG1Q13488 830 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 CLUL1Q15846 466 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 NFE2Q16621 373 aaPredicted RBP4.7□□□□□ -1.66
VPS41-207ENST00000439468 TOR2AQ5JU69 321 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 BCL6BQ8N143 479 aaPredicted RBP4.7□□□□□ -1.66
VPS41-207ENST00000439468 ZNF808Q8N4W9 903 aaPredicted RBP4.7□□□□□ -1.66
VPS41-207ENST00000439468 ANKRD53Q8N9V6 530 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 LPPQ93052 612 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 FERMT2Q96AC1 680 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 WDR92Q96MX6 357 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 QRSL1Q9H0R6 528 aaKnown RBP4.7□□□□□ -1.66
VPS41-207ENST00000439468 TLR9Q9NR96 1032 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 CCM2LQ9NUG4 571 aaPredicted RBP4.7□□□□□ -1.66
VPS41-207ENST00000439468 MKS1Q9NXB0 559 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 ZIM2Q9NZV7 527 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 NCDNQ9UBB6 729 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 TMPRSS11EQ9UL52 423 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 TESMINQ9Y4I5 508 aa4.7□□□□□ -1.66
VPS41-207ENST00000439468 CTDP1Q9Y5B0 961 aaPredicted RBP4.7□□□□□ -1.66
VPS41-207ENST00000439468 ST20-MTHFSA0A0A6YYL1 179 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 DAPK3O43293 454 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 OSMP13725 252 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 CCND1P24385 295 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 HIBADHP31937 336 aaKnown RBP4.69□□□□□ -1.66
VPS41-207ENST00000439468 GDF5P43026 501 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 FAPQ12884 760 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 DUSP8Q13202 625 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 CRHR2Q13324 411 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 TRIM25Q14258 630 aaKnown RBP4.69□□□□□ -1.66
VPS41-207ENST00000439468 PITRM1Q5JRX3 1037 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 ESPNLQ6ZVH7 1005 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 USP51Q70EK9 711 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 LYSMD2Q8IV50 215 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 EDAQ92838 391 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 CHMP4CQ96CF2 233 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 SLC6A15Q9H2J7 730 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 MTG2Q9H4K7 406 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 MSL2Q9HCI7 577 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 RCAN3Q9UKA8 241 aa4.69□□□□□ -1.66
VPS41-207ENST00000439468 NOB1Q9ULX3 412 aaKnown RBP4.69□□□□□ -1.66
VPS41-207ENST00000439468 LUC7L2Q9Y383 392 aaKnown RBP4.69□□□□□ -1.66
VPS41-207ENST00000439468 XPOTO43592 962 aaKnown RBP4.68□□□□□ -1.66
VPS41-207ENST00000439468 PCDH8O95206 1070 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 SCGB1D2O95969 90 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 RBP3P10745 1247 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 HNRNPLP14866 589 aaKnown RBP eCLIP4.68□□□□□ -1.66
VPS41-207ENST00000439468 EPHB1P54762 984 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 CCT2P78371 535 aaKnown RBP4.68□□□□□ -1.66
VPS41-207ENST00000439468 ACAP2Q15057 778 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 UGT8Q16880 541 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 KIAA1841Q6NSI8 718 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 RNF207Q6ZRF8 634 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 Q6ZSN1 163 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 GAREM2Q75VX8 874 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 BMP8AQ7Z5Y6 402 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 PNMA8AQ86V59 439 aaPredicted RBP4.68□□□□□ -1.66
VPS41-207ENST00000439468 C1orf210Q8IVY1 113 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 WDR75Q8IWA0 830 aaKnown RBP4.68□□□□□ -1.66
VPS41-207ENST00000439468 PPM1NQ8N819 430 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 JADE3Q92613 823 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 RABGGTAQ92696 567 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 EXTL1Q92935 676 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 ORAI2Q96SN7 254 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 NOL10Q9BSC4 688 aaKnown RBP4.68□□□□□ -1.66
VPS41-207ENST00000439468 ZNF747Q9BV97 191 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 RHOBTB2Q9BYZ6 727 aa4.68□□□□□ -1.66
VPS41-207ENST00000439468 AGO3Q9H9G7 860 aaKnown RBP4.68□□□□□ -1.66
VPS41-207ENST00000439468 DNAJC28Q9NX36 388 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms