RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 RBSNQ9H1K0 784 aa22.72■■□□□ 1.23
CHD3-204ENST00000439235 PIGRP01833 764 aa22.71■■□□□ 1.23
CHD3-204ENST00000439235 CRYBB1P53674 252 aaPredicted RBP22.71■■□□□ 1.23
CHD3-204ENST00000439235 PMS1P54277 932 aaKnown RBP22.71■■□□□ 1.23
CHD3-204ENST00000439235 MBTD1Q05BQ5 628 aa22.71■■□□□ 1.23
CHD3-204ENST00000439235 GSE1Q14687 1217 aa22.71■■□□□ 1.23
CHD3-204ENST00000439235 PCBP1Q15365 356 aaKnown RBP eCLIP22.71■■□□□ 1.23
CHD3-204ENST00000439235 DIS3LQ8TF46 1054 aaKnown RBP22.71■■□□□ 1.23
CHD3-204ENST00000439235 NOC3LQ8WTT2 800 aaKnown RBP22.71■■□□□ 1.23
CHD3-204ENST00000439235 MED15Q96RN5 788 aa22.71■■□□□ 1.23
CHD3-204ENST00000439235 MRPL4Q9BYD3 311 aaKnown RBP22.71■■□□□ 1.23
CHD3-204ENST00000439235 CELF4Q9BZC1 486 aaKnown RBP22.71■■□□□ 1.23
CHD3-204ENST00000439235 GINS2Q9Y248 185 aa22.71■■□□□ 1.23
CHD3-204ENST00000439235 NFE2L3Q9Y4A8 694 aa22.71■■□□□ 1.23
CHD3-204ENST00000439235 SIP14410 1827 aa22.71■■□□□ 1.23
CHD3-204ENST00000439235 GOLGA6L3A6NEY3 463 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 HNRNPDLO14979 420 aaKnown RBP22.7■■□□□ 1.22
CHD3-204ENST00000439235 TGFB1I1O43294 461 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 FGFR1OPO95684 399 aaKnown RBP22.7■■□□□ 1.22
CHD3-204ENST00000439235 DARSP14868 501 aaKnown RBP22.7■■□□□ 1.22
CHD3-204ENST00000439235 THPOP40225 353 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 LIG4P49917 911 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 ATN1P54259 1190 aaPredicted RBP22.7■■□□□ 1.22
CHD3-204ENST00000439235 SNX17Q15036 470 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 FAM187BQ17R55 369 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 NECAB2Q7Z6G3 386 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 CSGALNACT2Q8N6G5 542 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 DHX38Q92620 1227 aaKnown RBP22.7■■□□□ 1.22
CHD3-204ENST00000439235 WNT8BQ93098 351 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 PRIMPOLQ96LW4 560 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 OSMRQ99650 979 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 FZD8Q9H461 694 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 AGPAT3Q9NRZ7 376 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 CDY2AQ9Y6F7 541 aa22.7■■□□□ 1.22
CHD3-204ENST00000439235 ACKR2O00590 384 aa22.69■■□□□ 1.22
CHD3-204ENST00000439235 ERLIN2O94905 339 aa22.69■■□□□ 1.22
CHD3-204ENST00000439235 RPL13P26373 211 aaKnown RBP22.69■■□□□ 1.22
CHD3-204ENST00000439235 FKBP3Q00688 224 aaKnown RBP22.69■■□□□ 1.22
CHD3-204ENST00000439235 NCAPHQ15003 741 aa22.69■■□□□ 1.22
CHD3-204ENST00000439235 NFIL3Q16649 462 aa22.69■■□□□ 1.22
CHD3-204ENST00000439235 TRIM71Q2Q1W2 868 aaKnown RBP22.69■■□□□ 1.22
CHD3-204ENST00000439235 ZPBP2Q6X784 338 aa22.69■■□□□ 1.22
CHD3-204ENST00000439235 ANKRD33Q7Z3H0 272 aa22.69■■□□□ 1.22
CHD3-204ENST00000439235 CAGE1Q8TC20 777 aa22.69■■□□□ 1.22
CHD3-204ENST00000439235 PAWRQ96IZ0 340 aaKnown RBP22.69■■□□□ 1.22
CHD3-204ENST00000439235 DUSP9Q99956 384 aaKnown RBP22.69■■□□□ 1.22
CHD3-204ENST00000439235 DCDC2CA8MYV0 355 aa22.68■■□□□ 1.22
CHD3-204ENST00000439235 PQBP1O60828 265 aaKnown RBP22.68■■□□□ 1.22
CHD3-204ENST00000439235 CD4P01730 458 aa22.68■■□□□ 1.22
CHD3-204ENST00000439235 CTSHP09668 335 aa22.68■■□□□ 1.22
CHD3-204ENST00000439235 SFPQP23246 707 aaKnown RBP eCLIP22.68■■□□□ 1.22
CHD3-204ENST00000439235 EIF4BP23588 611 aaKnown RBP22.68■■□□□ 1.22
CHD3-204ENST00000439235 RBL2Q08999 1139 aa22.68■■□□□ 1.22
CHD3-204ENST00000439235 MGAT3Q09327 533 aa22.68■■□□□ 1.22
CHD3-204ENST00000439235 PRPF4BQ13523 1007 aaKnown RBP22.68■■□□□ 1.22
CHD3-204ENST00000439235 MYBPC2Q14324 1141 aa22.68■■□□□ 1.22
CHD3-204ENST00000439235 C12orf56Q8IXR9 622 aa22.68■■□□□ 1.22
CHD3-204ENST00000439235 TOX2Q96NM4 488 aa22.68■■□□□ 1.22
CHD3-204ENST00000439235 MINDY3Q9H8M7 445 aa22.68■■□□□ 1.22
CHD3-204ENST00000439235 EVPLQ92817 2033 aa22.68■■□□□ 1.22
CHD3-204ENST00000439235 CNTNAP2Q9UHC6 1331 aa22.67■■□□□ 1.22
CHD3-204ENST00000439235 NR3C1P04150 777 aa22.67■■□□□ 1.22
CHD3-204ENST00000439235 NR2F2P24468 414 aa22.67■■□□□ 1.22
CHD3-204ENST00000439235 NCBP1Q09161 790 aaKnown RBP22.67■■□□□ 1.22
CHD3-204ENST00000439235 BFSP2Q13515 415 aa22.67■■□□□ 1.22
CHD3-204ENST00000439235 TMEM132AQ24JP5 1023 aa22.67■■□□□ 1.22
CHD3-204ENST00000439235 FAM26DQ5JW98 314 aa22.67■■□□□ 1.22
CHD3-204ENST00000439235 ARMCX5Q6P1M9 558 aa22.67■■□□□ 1.22
CHD3-204ENST00000439235 FAM114A1Q8IWE2 563 aa22.67■■□□□ 1.22
CHD3-204ENST00000439235 CEP63Q96MT8 703 aa22.67■■□□□ 1.22
CHD3-204ENST00000439235 TARS2Q9BW92 718 aaKnown RBP22.67■■□□□ 1.22
CHD3-204ENST00000439235 THAP9Q9H5L6 903 aa22.67■■□□□ 1.22
CHD3-204ENST00000439235 CDHR5Q9HBB8 845 aa22.67■■□□□ 1.22
CHD3-204ENST00000439235 FSD2A1L4K1 749 aa22.66■■□□□ 1.22
CHD3-204ENST00000439235 CETN3O15182 167 aa22.66■■□□□ 1.22
CHD3-204ENST00000439235 GARTP22102 1010 aa22.66■■□□□ 1.22
CHD3-204ENST00000439235 HSP90AA2PQ14568 343 aaPredicted RBP22.66■■□□□ 1.22
CHD3-204ENST00000439235 UVSSAQ2YD98 709 aa22.66■■□□□ 1.22
CHD3-204ENST00000439235 TRIM60Q495X7 471 aa22.66■■□□□ 1.22
CHD3-204ENST00000439235 SLFN12LQ6IEE8 588 aa22.66■■□□□ 1.22
CHD3-204ENST00000439235 CATSPER4Q7RTX7 472 aa22.66■■□□□ 1.22
CHD3-204ENST00000439235 SLC9A9Q8IVB4 645 aa22.66■■□□□ 1.22
CHD3-204ENST00000439235 ZC3H3Q8IXZ2 948 aaKnown RBP22.66■■□□□ 1.22
CHD3-204ENST00000439235 SRRTQ9BXP5 876 aaKnown RBP22.66■■□□□ 1.22
CHD3-204ENST00000439235 IKZF4Q9H2S9 585 aa22.66■■□□□ 1.22
CHD3-204ENST00000439235 FANCLQ9NW38 375 aa22.66■■□□□ 1.22
CHD3-204ENST00000439235 KIAA0391O15091 583 aaKnown RBP22.65■■□□□ 1.22
CHD3-204ENST00000439235 CLIC2O15247 247 aa22.65■■□□□ 1.22
CHD3-204ENST00000439235 TOM1L1O75674 476 aa22.65■■□□□ 1.22
CHD3-204ENST00000439235 CKBP12277 381 aa22.65■■□□□ 1.22
CHD3-204ENST00000439235 SPAG1Q07617 926 aa22.65■■□□□ 1.22
CHD3-204ENST00000439235 ADAM9Q13443 819 aa22.65■■□□□ 1.22
CHD3-204ENST00000439235 AMHR2Q16671 573 aa22.65■■□□□ 1.22
CHD3-204ENST00000439235 ATF7IP2Q5U623 682 aa22.65■■□□□ 1.22
CHD3-204ENST00000439235 LRRC55Q6ZSA7 311 aa22.65■■□□□ 1.22
CHD3-204ENST00000439235 TMEM174Q8WUU8 243 aa22.65■■□□□ 1.22
CHD3-204ENST00000439235 ACO2Q99798 780 aaKnown RBP22.65■■□□□ 1.22
CHD3-204ENST00000439235 MAGEC2Q9UBF1 373 aaPredicted RBP22.65■■□□□ 1.22
CHD3-204ENST00000439235 TRIP12Q14669 1992 aaPredicted RBP22.65■■□□□ 1.22
CHD3-204ENST00000439235 ANKRD63C9JTQ0 380 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms