RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 TMEM120BA0PK00 339 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 COBLO75128 1261 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 PHF2O75151 1096 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 FAM155BO75949 473 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 FCER1AP12319 257 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 PTGIRP43119 386 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 BARGINQ6ZT62 677 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 NLRP10Q86W26 655 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 TDRPQ86YL5 185 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 CMTR1Q8N1G2 835 aaKnown RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 ARHGAP18Q8N392 663 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 SMYD1Q8NB12 490 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 BARHL2Q9NY43 387 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 PACSIN2Q9UNF0 486 aaPredicted RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 USF3Q68DE3 2245 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 GREB1Q4ZG55 1949 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 AP1G1O43747 822 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 UPP2O95045 317 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 ALAS1P13196 640 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 CDC25CP30307 473 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 PDK4Q16654 411 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 CCDC142Q17RM4 750 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 RFFLQ8WZ73 363 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 PRCCQ92733 491 aaPredicted RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 NDNQ99608 321 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 SPATA16Q9BXB7 569 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 SMIM31A0A1B0GVY4 71 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 MIF4GDA9UHW6 222 aaKnown RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 ERVV-2B6SEH9 535 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 DDX3XO00571 662 aaKnown RBP eCLIP5.53□□□□□ -1.522e-13■■□□□ 11.4
RIF1-203ENST00000428287 IDO1P14902 403 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 CHRNA3P32297 505 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 POLGP54098 1239 aaPredicted RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 RAB15P59190 212 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 MCCD1P59942 119 aaPredicted RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 PDE4DQ08499 809 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 RRP1BQ14684 758 aaKnown RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 SLC15A2Q16348 729 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 UBLCP1Q8WVY7 318 aaPredicted RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 ZWILCHQ9H900 591 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 NMRK1Q9NWW6 199 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 BLOC1S6Q9UL45 172 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 BRWD1Q9NSI6 2320 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 SPDYE5A6NIY4 337 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 JAM2P57087 298 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 SULT2A1Q06520 285 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 CBLBQ13191 982 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 SETDB1Q15047 1291 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 TSNAXIP1Q2TAA8 658 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 ACSBG2Q5FVE4 666 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 ZSCAN10Q96SZ4 725 aaPredicted RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 OCEL1Q9H607 264 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 TRAF3IP3Q9Y228 551 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 ADGRA3Q8IWK6 1321 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 KIAA2026Q5HYC2 2103 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 RASGRF2O14827 1237 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 MBD4O95243 580 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 CGB2Q6NT52 195 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 NOP9Q86U38 636 aaKnown RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 ANKRD31Q8N7Z5 1873 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.53□□□□□ -1.52
RIF1-203ENST00000428287 NUDCD1Q96RS6 583 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 LRRC19Q9H756 370 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 WHRNQ9P202 907 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 SSX2IPQ9Y2D8 614 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 ARHGEF17Q96PE2 2063 aaPredicted RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 RIPK2O43353 540 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 VCAM1P19320 739 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 CTNNA2P26232 953 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 KLHL30Q0D2K2 578 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 KHDC1Q4VXA5 237 aaKnown RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 LIN52Q52LA3 116 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 SBK1Q52WX2 424 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 IFIT1BQ5T764 474 aaKnown RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 DSTYKQ6XUX3 929 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 C12orf50Q8NA57 414 aaPredicted RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 RAPGEF4Q8WZA2 1011 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 CD101Q93033 1021 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 MTMR9Q96QG7 549 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 CRAMP1Q96RY5 1269 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 MIPEPQ99797 713 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 CELF4Q9BZC1 486 aaKnown RBP5.53□□□□□ -1.52
RIF1-203ENST00000428287 TRIM7Q9C029 511 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 PCDH18Q9HCL0 1135 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 FETUBQ9UGM5 382 aa5.53□□□□□ -1.52
RIF1-203ENST00000428287 A0A1B0GVG6 124 aa5.52□□□□□ -1.53
RIF1-203ENST00000428287 BUB1O43683 1085 aa5.52□□□□□ -1.53
RIF1-203ENST00000428287 ATP9BO43861 1147 aa5.52□□□□□ -1.53
RIF1-203ENST00000428287 ZPR1O75312 459 aa5.52□□□□□ -1.53
RIF1-203ENST00000428287 FOXN2P32314 431 aa5.52□□□□□ -1.53
RIF1-203ENST00000428287 VHLP40337 213 aa5.52□□□□□ -1.53
RIF1-203ENST00000428287 RAPGEF1Q13905 1077 aa5.52□□□□□ -1.53
RIF1-203ENST00000428287 TMC4Q7Z404 712 aa5.52□□□□□ -1.53
RIF1-203ENST00000428287 RBM33Q96EV2 1170 aaKnown RBP5.52□□□□□ -1.53
RIF1-203ENST00000428287 SPZ1Q9BXG8 430 aa5.52□□□□□ -1.53
RIF1-203ENST00000428287 RBM38Q9H0Z9 239 aaKnown RBP5.52□□□□□ -1.53
RIF1-203ENST00000428287 TAS2R1Q9NYW7 299 aa5.52□□□□□ -1.53
RIF1-203ENST00000428287 KLHL14Q9P2G3 628 aa5.52□□□□□ -1.53
RIF1-203ENST00000428287 PNMA3Q9UL41 463 aa5.52□□□□□ -1.53
RIF1-203ENST00000428287 COMMD3-BMI1R4GMX3 469 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms