RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 GJB1P08034 283 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 CDC25BP30305 580 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 ACLYP53396 1101 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 COPB1P53618 953 aaKnown RBP18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 MYBPC2Q14324 1141 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 RSPH3Q86UC2 560 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 ZNF410Q86VK4 478 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 KCNN1Q92952 543 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 PPP1R16BQ96T49 567 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 NOC4LQ9BVI4 516 aaKnown RBP18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 MRPL4Q9BYD3 311 aaKnown RBP18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 INO80BQ9C086 356 aaPredicted RBP18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 UNC93B1Q9H1C4 597 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 VPS16Q9H269 839 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 METTL14Q9HCE5 456 aaKnown RBP18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 PSMC2P35998 433 aaKnown RBP18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 PTENP60484 403 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 POU5F1BQ06416 359 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 TAF2Q6P1X5 1199 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 IRF2BP1Q8IU81 584 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 SLC9A9Q8IVB4 645 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 ZC3H3Q8IXZ2 948 aaKnown RBP18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 POMGNT1Q8WZA1 660 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 ZNF668Q96K58 619 aaPredicted RBP18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 TUBGCP2Q9BSJ2 902 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 ARMCX3Q9UH62 379 aaPredicted RBP18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 GTF2IRD1Q9UHL9 959 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 NOD1Q9Y239 953 aa18.74■□□□□ 0.59
CCDC28B-202ENST00000421922 M0QZ92 97 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 TREHO43280 583 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 RPLP2P05387 115 aaKnown RBP18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 CCL5P13501 91 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 GPC3P51654 580 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 NLRP11P59045 1033 aaKnown RBP18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 MAN2A1Q16706 1144 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 FKBP15Q5T1M5 1219 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 LHX8Q68G74 356 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 SLFN12LQ6IEE8 588 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 CCSAPQ6IQ19 270 aaPredicted RBP18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 C12orf56Q8IXR9 622 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 FAM186BQ8IYM0 893 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 KIAA0319LQ8IZA0 1049 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 ZNF710Q8N1W2 664 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 XXYLT1Q8NBI6 393 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 MKNK1Q9BUB5 465 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 NFKBIZQ9BYH8 718 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 RNF208Q9H0X6 261 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 IKZF4Q9H2S9 585 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 PCIF1Q9H4Z3 704 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 PRMT7Q9NVM4 692 aaPredicted RBP18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 HSPBP1Q9NZL4 362 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 GINS2Q9Y248 185 aa18.73■□□□□ 0.59
CCDC28B-202ENST00000421922 A0A087WZ62 844 aa18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 A0A1B0GTH6 734 aa18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 KRT13P13646 458 aa18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 GARTP22102 1010 aa18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 PPP2R3AQ06190 1150 aa18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 PKN2Q16513 984 aaKnown RBP18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 FBXO46Q6PJ61 603 aaPredicted RBP18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 RUFY4Q6ZNE9 571 aa18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 TAS1R3Q7RTX0 852 aa18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 FRMD5Q7Z6J6 570 aa18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 NME8Q8N427 588 aa18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 SPC24Q8NBT2 197 aa18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 DNAJB3Q8WWF6 145 aa18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 FDXACB1Q9BRP7 624 aaPredicted RBP18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 GCOM2Q9BZD3 368 aaPredicted RBP18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 ANKFY1Q9P2R3 1169 aa18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.72■□□□□ 0.59
CCDC28B-202ENST00000421922 ANKRD63C9JTQ0 380 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 KIAA0391O15091 583 aaKnown RBP18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 ERLIN2O94905 339 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 PIGRP01833 764 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 HOXC8P31273 242 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 ZNF200P98182 395 aaPredicted RBP18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 UBXN1Q04323 297 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 PTPN11Q06124 597 aaPredicted RBP18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 PRPF4BQ13523 1007 aaKnown RBP18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 ITGA7Q13683 1181 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 KIZQ2M2Z5 673 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 TCERG1LQ5VWI1 586 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 ZPBP2Q6X784 338 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 SRGAP1Q7Z6B7 1085 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 SESTD1Q86VW0 696 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 NAP1L5Q96NT1 182 aaPredicted RBP18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 DEFB118Q96PH6 123 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 PPP1R9BQ96SB3 815 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 CBWD1Q9BRT8 395 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 CCDC113Q9H0I3 377 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 STARD7Q9NQZ5 370 aa18.71■□□□□ 0.59
CCDC28B-202ENST00000421922 LGALS16A8MUM7 142 aa18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 TISP43B9A030 160 aa18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 TULP1O00294 542 aaPredicted RBP18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 AKAP3O75969 853 aa18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 MARSP56192 900 aaKnown RBP18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 ADAM17P78536 824 aa18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 MBTD1Q05BQ5 628 aa18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 NCBP1Q09161 790 aaKnown RBP18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 TMEM62Q0P6H9 643 aa18.7■□□□□ 0.58
CCDC28B-202ENST00000421922 DCAF17Q5H9S7 520 aaPredicted RBP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms