RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 PPFIA4O75335 1185 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 TRPA1O75762 1119 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 C22orf31O95567 290 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 TBC1D8O95759 1140 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 MYL3P08590 195 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 RARBP10826 455 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 TRIM21P19474 475 aaKnown RBP6.52□□□□□ -1.37
HMGB3-202ENST00000419110 ATP4AP20648 1035 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 GLRA2P23416 452 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 TMOD1P28289 359 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 PSMC2P35998 433 aaKnown RBP6.52□□□□□ -1.37
HMGB3-202ENST00000419110 MATR3P43243 847 aaKnown RBP eCLIP6.52□□□□□ -1.37
HMGB3-202ENST00000419110 VEGFBP49765 207 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 PRMT2P55345 433 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 MARSP56192 900 aaKnown RBP6.52□□□□□ -1.37
HMGB3-202ENST00000419110 IGBP1P78318 339 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 GTF2BQ00403 316 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 MYL7Q01449 175 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 ADAM9Q13443 819 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 CAPSQ13938 189 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 GRIK4Q16099 956 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 FSCN1Q16658 493 aaKnown RBP6.52□□□□□ -1.37
HMGB3-202ENST00000419110 TMEM132AQ24JP5 1023 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 VWA3BQ502W6 1294 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 ZC2HC1CQ53FD0 456 aaPredicted RBP6.52□□□□□ -1.37
HMGB3-202ENST00000419110 TCERG1LQ5VWI1 586 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 IER5Q5VY09 327 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 CDCA2Q69YH5 1023 aaPredicted RBP6.52□□□□□ -1.37
HMGB3-202ENST00000419110 APTXQ7Z2E3 356 aaKnown RBP6.52□□□□□ -1.37
HMGB3-202ENST00000419110 CCDC186Q7Z3E2 898 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 FRMD5Q7Z6J6 570 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 ZSCAN30Q86W11 494 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 SLC9A9Q8IVB4 645 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 TRIM59Q8IWR1 403 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 TMEM161BQ8NDZ6 487 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 CD99L2Q8TCZ2 262 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 RAET1EQ8TD07 263 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 ASAP3Q8TDY4 903 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 TRIB2Q92519 343 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 KCNN1Q92952 543 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 TMEM143Q96AN5 459 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 LENG1Q96BZ8 264 aaPredicted RBP6.52□□□□□ -1.37
HMGB3-202ENST00000419110 RTN4Q9NQC3 1192 aaKnown RBP6.52□□□□□ -1.37
HMGB3-202ENST00000419110 SRRDQ9UH36 339 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 GJD2Q9UKL4 321 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 TBX20Q9UMR3 447 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 GNEQ9Y223 722 aaKnown RBP6.52□□□□□ -1.37
HMGB3-202ENST00000419110 ZKSCAN5Q9Y2L8 839 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 Q9Y3F1 56 aa6.52□□□□□ -1.37
HMGB3-202ENST00000419110 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.52□□□□□ -1.37
HMGB3-202ENST00000419110 ADGRA3Q8IWK6 1321 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 RRN3P2A6NIE6 340 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 A6NJR5 290 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 H3BRB1 525 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 GPR25O00155 361 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 CLIC2O15247 247 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 MAPK13O15264 365 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 DYNC1LI2O43237 492 aaPredicted RBP6.51□□□□□ -1.37
HMGB3-202ENST00000419110 TGFB1I1O43294 461 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 ADCY6O43306 1168 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 STX10O60499 249 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 MFAP3LO75121 409 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 AFPP02771 609 aaKnown RBP6.51□□□□□ -1.37
HMGB3-202ENST00000419110 PRKCBP05771 671 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 C6orf222P0C671 652 aaPredicted RBP6.51□□□□□ -1.37
HMGB3-202ENST00000419110 INSRRP14616 1297 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 GARTP22102 1010 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 CTGFP29279 349 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 CNGA1P29973 690 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 HOXD13P35453 343 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 ARL2P36404 184 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 CLCN3P51790 818 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 SOX10P56693 466 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 BFSP1Q12934 665 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 NOLC1Q14978 699 aaKnown RBP eCLIP6.51□□□□□ -1.37
HMGB3-202ENST00000419110 SYCP1Q15431 976 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 MAPK6Q16659 721 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 KIAA0753Q2KHM9 967 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 NYAP1Q6ZVC0 841 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 INTS8Q75QN2 995 aaKnown RBP6.51□□□□□ -1.37
HMGB3-202ENST00000419110 APBB1IPQ7Z5R6 666 aaPredicted RBP6.51□□□□□ -1.37
HMGB3-202ENST00000419110 IRF2BP1Q8IU81 584 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 RHPN2Q8IUC4 686 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 LRRC71Q8N4P6 559 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 METTL13Q8N6R0 699 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 XXYLT1Q8NBI6 393 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 RNF149Q8NC42 400 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 LMBR1Q8WVP7 490 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 TRAPPC12Q8WVT3 735 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 POMGNT1Q8WZA1 660 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 CCDC51Q96ER9 411 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 EEF2KMTQ96G04 330 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 NLRP4Q96MN2 994 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 NAP1L5Q96NT1 182 aaPredicted RBP6.51□□□□□ -1.37
HMGB3-202ENST00000419110 ERGIC2Q96RQ1 377 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 CEP89Q96ST8 783 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 C16orf70Q9BSU1 422 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 NUP58Q9BVL2 599 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 STRA6Q9BX79 667 aa6.51□□□□□ -1.37
HMGB3-202ENST00000419110 MRPL4Q9BYD3 311 aaKnown RBP6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms