RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CEP83Q9Y592 693 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 COL11A2P13942 1736 aaPredicted RBP6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 ATRNL1Q5VV63 1379 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 LTBP4Q8N2S1 1624 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 IGLV3-22A0A075B6J6 115 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 NPHP3-ACAD11A0A0J9YXS1 232 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 USP17L10C9JJH3 530 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 RGS16O15492 202 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 CYP1A2P05177 515 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 CCNB1P14635 433 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 HMGB2P26583 209 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 ARID5AQ03989 594 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 BNIP1Q12981 228 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 NFIXQ14938 502 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 CNGA2Q16280 664 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 SPRED3Q2MJR0 410 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 RNF43Q68DV7 783 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 TATDN1Q6P1N9 297 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 DPP8Q6V1X1 898 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 ZNF720Q7Z2F6 126 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 APLFQ8IW19 511 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 SLC17A8Q8NDX2 589 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 MIEF2Q96C03 454 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 RBM17Q96I25 401 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 AGPAT1Q99943 283 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 INTS2Q9H0H0 1204 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 KANSL2Q9H9L4 492 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 PPCSQ9HAB8 311 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 CD248Q9HCU0 757 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 INTS9Q9NV88 658 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 USP40Q9NVE5 1235 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 CLEC11AQ9Y240 323 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 ADGRA3Q8IWK6 1321 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 PASKQ96RG2 1323 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 DOCK5Q9H7D0 1870 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 DCDC2CA8MYV0 355 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 E7ENQ6 273 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 MAGEB2O15479 319 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 PLA2G6O60733 806 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 PSMD10O75832 226 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 HLA-DOAP06340 250 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 ITIH2P19823 946 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 TNFAIP3P21580 790 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 CCND1P24385 295 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 PSEN1P49768 467 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 GPC5P78333 572 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 BFSP1Q12934 665 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 AUHQ13825 339 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 EPC2Q52LR7 807 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 INTS8Q75QN2 995 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 ASRGL1Q7L266 308 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 HS2ST1Q7LGA3 356 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 LRRC47Q8N1G4 583 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 KCNN1Q92952 543 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 L3MBTL3Q96JM7 780 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 FAM81BQ96LP2 452 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 PLVAPQ9BX97 442 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 PARVGQ9HBI0 331 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 NOD2Q9HC29 1040 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 GPCPD1Q9NPB8 672 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 ARHGEF3Q9NR81 526 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 PNMA2Q9UL42 364 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 MTUS1Q9ULD2 1270 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 ATP8A1Q9Y2Q0 1164 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 PCDHB13Q9Y5F0 798 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 PCDHA1Q9Y5I3 950 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 ALG6Q9Y672 507 aa6.18□□□□□ -1.42
CCDC88A-203ENST00000412148 IGSF9BQ9UPX0 1349 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 PARP14Q460N5 1801 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 ABLIM1O14639 778 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 FSCN2O14926 492 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 MSH4O15457 936 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 ATP5HO75947 161 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 UFL1O94874 794 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 ABHD2P08910 425 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 RXRBP28702 533 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 RPL21P46778 160 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 CASP4P49662 377 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 PSMC6P62333 389 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 MYL7Q01449 175 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 MSL1Q68DK7 614 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 OTOP1Q7RTM1 612 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 GLYCTKQ8IVS8 523 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 SP8Q8IXZ3 490 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 CNBD1Q8NA66 436 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 BBOF1Q8ND07 529 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 FBXO25Q8TCJ0 367 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 ALG3Q92685 438 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 CNKSR1Q969H4 720 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 EIF2AK1Q9BQI3 630 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 TRIM51Q9BSJ1 452 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 RUSC1Q9BVN2 902 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 IDI2Q9BXS1 227 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 CELF4Q9BZC1 486 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 PHACTR1Q9C0D0 580 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 RABEP2Q9H5N1 569 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 ERVK-5Q9HDB9 667 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 OSGEPQ9NPF4 335 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 AGPAT3Q9NRZ7 376 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 EURLQ9NYK6 297 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms