RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 SRRTQ9BXP5 876 aaKnown RBP-0.73□□□□□ -2.53
RNU4-88P-201ENST00000411220 RMI1Q9H9A7 625 aa-0.73□□□□□ -2.53
RNU4-88P-201ENST00000411220 SGK2Q9HBY8 427 aa-0.73□□□□□ -2.53
RNU4-88P-201ENST00000411220 HSPBP1Q9NZL4 362 aa-0.73□□□□□ -2.53
RNU4-88P-201ENST00000411220 COL11A1P12107 1806 aaPredicted RBP-0.73□□□□□ -2.53
RNU4-88P-201ENST00000411220 SETXQ7Z333 2677 aaKnown RBP-0.73□□□□□ -2.53
RNU4-88P-201ENST00000411220 PLSCR5A0PG75 271 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 UPK3BL1B0FP48 263 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 UPK3BL2E5RIL1 263 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 HOXA3O43365 443 aaPredicted RBP-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 KRT33AO76009 404 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 SNAI1O95863 264 aaPredicted RBP-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 MZF1P28698 734 aaPredicted RBP-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 USP5P45974 858 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 ERVFC1-1P60608 527 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 OTUD7BQ6GQQ9 843 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 ADGRA1Q86SQ6 560 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 PIM3Q86V86 326 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 PROSER1Q86XN7 944 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 PLXDC1Q8IUK5 500 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 REPS1Q96D71 796 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 CCDC74BQ96LY2 380 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 MRPL44Q9H9J2 332 aaKnown RBP-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 SCRT2Q9NQ03 307 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 ACANP16112 2415 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 UBR5O95071 2799 aaPredicted RBP-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 PDZD2O15018 2839 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 TNCP24821 2201 aa-0.74□□□□□ -2.53
RNU4-88P-201ENST00000411220 STAB2Q8WWQ8 2551 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 A0A0U1RQF3 1178 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 E5RJQ4 531 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 HGSO14964 777 aaPredicted RBP-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 ORC4O43929 436 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 EGFP01133 1207 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 ALOX5P09917 674 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 MRE11P49959 708 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 EHHADHQ08426 723 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 FOXF1Q12946 379 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 DAZAP2Q15038 168 aaPredicted RBP-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 C20orf194Q5TEA3 1177 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 ZNF343Q6P1L6 599 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 Q6ZS52 159 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 CTU1Q7Z7A3 348 aaKnown RBP-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 RBM23Q86U06 439 aaKnown RBP-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 SLFN12Q8IYM2 578 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 ARRDC4Q8NCT1 418 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 COQ8BQ96D53 544 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 ATOH8Q96SQ7 321 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 ZDHHC5Q9C0B5 715 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 TRMT1Q9NXH9 659 aaKnown RBP-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 TRAK1Q9UPV9 953 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 CHTOPQ9Y3Y2 248 aaKnown RBP-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 HIVEP3Q5T1R4 2406 aa-0.75□□□□□ -2.53
RNU4-88P-201ENST00000411220 TULP1O00294 542 aaPredicted RBP-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 GFRA2O00451 464 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 HK1P19367 917 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 HNRNPA2B1P22626 353 aaKnown RBP-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 YY1P25490 414 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 PXNP49023 591 aaPredicted RBP-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 HOXA1P49639 335 aaPredicted RBP-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 MEOX1P50221 254 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 EGFEM1PQ0D2K5 195 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 SCAPQ12770 1279 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 RAB33AQ14088 237 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 ZNF718Q3SXZ3 478 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 HABP4Q5JVS0 413 aaKnown RBP-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 KIAA1755Q5JYT7 1200 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 CWF19L1Q69YN2 538 aaKnown RBP-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 NADSYN1Q6IA69 706 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 FAM166AQ6J272 317 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 KIAA1211LQ6NV74 962 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 ABHD15Q6UXT9 468 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 BARGINQ6ZT62 677 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 RETREG2Q8NC44 543 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 LMO3Q8TAP4 145 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 PLEKHO2Q8TD55 490 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 SORCS1Q8WY21 1168 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 ST8SIA2Q92186 375 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 NTNG2Q96CW9 530 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 DCLRE1CQ96SD1 692 aaKnown RBP-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 DHX36Q9H2U1 1008 aaKnown RBP-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 TCF7L2Q9NQB0 619 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 GFOD1Q9NXC2 390 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 CYP8B1Q9UNU6 501 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 ZNF451Q9Y4E5 1061 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 EP300Q09472 2414 aaPredicted RBP-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 NF1P21359 2839 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 FAT3Q8TDW7 4589 aa-0.76□□□□□ -2.53
RNU4-88P-201ENST00000411220 FAM208BQ5VWN6 2430 aa-0.77□□□□□ -2.53
RNU4-88P-201ENST00000411220 MED19A0JLT2 244 aaPredicted RBP-0.77□□□□□ -2.53
RNU4-88P-201ENST00000411220 USP17L10C9JJH3 530 aa-0.77□□□□□ -2.53
RNU4-88P-201ENST00000411220 IL18BPO95998 194 aa-0.77□□□□□ -2.53
RNU4-88P-201ENST00000411220 ZBTB48P10074 688 aaPredicted RBP-0.77□□□□□ -2.53
RNU4-88P-201ENST00000411220 SP100P23497 879 aaPredicted RBP-0.77□□□□□ -2.53
RNU4-88P-201ENST00000411220 KCNQ1P51787 676 aa-0.77□□□□□ -2.53
RNU4-88P-201ENST00000411220 RASIP1Q5U651 963 aa-0.77□□□□□ -2.53
RNU4-88P-201ENST00000411220 FILIP1Q7Z7B0 1213 aa-0.77□□□□□ -2.53
RNU4-88P-201ENST00000411220 ZNF668Q96K58 619 aaPredicted RBP-0.77□□□□□ -2.53
RNU4-88P-201ENST00000411220 NODALQ96S42 347 aa-0.77□□□□□ -2.53
RNU4-88P-201ENST00000411220 TACO1Q9BSH4 297 aaKnown RBP-0.77□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms