RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 TRIOO75962 3097 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 A0A087X0B3 334 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 ABHD14A-ACY1A0A1B0GW23 586 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 MBLAC1A4D2B0 266 aaPredicted RBP10.23□□□□□ -0.77
VPS53-203ENST00000401468 BACH1O14867 736 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 HBP1O60381 514 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 INSRRP14616 1297 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 CLCN1P35523 988 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 CCT6AP40227 531 aaKnown RBP10.23□□□□□ -0.77
VPS53-203ENST00000401468 UBA7P41226 1012 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 GATMP50440 423 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 USP46P62068 366 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 CYP4A11Q02928 519 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 CTTNQ14247 550 aaKnown RBP10.23□□□□□ -0.77
VPS53-203ENST00000401468 NAALADL2Q58DX5 795 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 PLEKHG4Q58EX7 1191 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 SPECC1Q5M775 1068 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 PDXDC2PQ6P474 469 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 ANO5Q75V66 913 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 KCNK18Q7Z418 384 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 CABP7Q86V35 215 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 ENGASEQ8NFI3 743 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 ADAMTS19Q8TE59 1207 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 GBP4Q96PP9 640 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 IFIH1Q9BYX4 1025 aaKnown RBP10.23□□□□□ -0.77
VPS53-203ENST00000401468 SUGCTQ9HAC7 445 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 BLOC1S4Q9NUP1 217 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 STK17AQ9UEE5 414 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 SAMM50Q9Y512 469 aa10.23□□□□□ -0.77
VPS53-203ENST00000401468 IGKV6-21A0A0C4DH24 114 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 EYA4O95677 639 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 AMHP03971 560 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 PLCG1P19174 1290 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 CD52P31358 61 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 YWHABP31946 246 aaKnown RBP10.22□□□□□ -0.77
VPS53-203ENST00000401468 RARRES1P49788 294 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 SNW1Q13573 536 aaKnown RBP10.22□□□□□ -0.77
VPS53-203ENST00000401468 LPIN1Q14693 890 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 PAN2Q504Q3 1202 aaKnown RBP10.22□□□□□ -0.77
VPS53-203ENST00000401468 EP400NLQ6ZTU2 488 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 TPH2Q8IWU9 490 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 FMR1NBQ8N0W7 255 aaPredicted RBP10.22□□□□□ -0.77
VPS53-203ENST00000401468 LINC01465Q8N7H1 131 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 PHOSPHO2Q8TCD6 241 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 LINC01599Q8WXQ3 324 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 MRPS27Q92552 414 aaKnown RBP10.22□□□□□ -0.77
VPS53-203ENST00000401468 SEPT8Q92599 483 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 HLA-CQ95604 372 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 ASB2Q96Q27 587 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 NACC1Q96RE7 527 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 PYM1Q9BRP8 204 aaKnown RBP10.22□□□□□ -0.77
VPS53-203ENST00000401468 GOLPH3LQ9H4A5 285 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 AGO3Q9H9G7 860 aaKnown RBP10.22□□□□□ -0.77
VPS53-203ENST00000401468 LMBRD1Q9NUN5 540 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 DDX19AQ9NUU7 478 aaKnown RBP10.22□□□□□ -0.77
VPS53-203ENST00000401468 KIAA1024Q9UPX6 916 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 NRCAMQ92823 1304 aa10.22□□□□□ -0.77
VPS53-203ENST00000401468 MYO10Q9HD67 2058 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 TMEM150BA6NC51 233 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 RRN3P2A6NIE6 340 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 PFKFB1P16118 471 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 TXLNAP40222 546 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 SLC12A3P55017 1021 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 UBE2HP62256 183 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 MGAT3Q09327 533 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 KARSQ15046 597 aaKnown RBP10.21□□□□□ -0.77
VPS53-203ENST00000401468 ZNF484Q5JVG2 852 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 CNNM4Q6P4Q7 775 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 CCDC73Q6ZRK6 1079 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 RPAINQ86UA6 219 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 ELOA2Q8IYF1 753 aaPredicted RBP10.21□□□□□ -0.77
VPS53-203ENST00000401468 CALML4Q96GE6 196 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 YME1L1Q96TA2 773 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 RAD9AQ99638 391 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 SH2D3AQ9BRG2 576 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 CUEDC2Q9H467 287 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 DHX33Q9H6R0 707 aaKnown RBP10.21□□□□□ -0.77
VPS53-203ENST00000401468 MAGEF1Q9HAY2 307 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 CYP26B1Q9NR63 512 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 NRBP2Q9NSY0 501 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 KCND2Q9NZV8 630 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 CCDC39Q9UFE4 941 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 USP25Q9UHP3 1055 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 KCNH3Q9ULD8 1083 aa10.21□□□□□ -0.77
VPS53-203ENST00000401468 ZBTB39O15060 712 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 HOXA2O43364 376 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 GADD45BO75293 160 aaPredicted RBP10.2□□□□□ -0.78
VPS53-203ENST00000401468 MAFO75444 373 aaPredicted RBP10.2□□□□□ -0.78
VPS53-203ENST00000401468 C22orf31O95567 290 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 GNAT1P11488 350 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 NDUFA8P51970 172 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 MRPS5P82675 430 aaKnown RBP10.2□□□□□ -0.78
VPS53-203ENST00000401468 MRPS6P82932 125 aaKnown RBP10.2□□□□□ -0.78
VPS53-203ENST00000401468 FBXO47Q5MNV8 452 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 OTUD6AQ7L8S5 288 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 ALYREFQ86V81 257 aaKnown RBP10.2□□□□□ -0.78
VPS53-203ENST00000401468 CKAP2LQ8IYA6 745 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 EXOC8Q8IYI6 725 aa10.2□□□□□ -0.78
VPS53-203ENST00000401468 SYT2Q8N9I0 419 aaPredicted RBP10.2□□□□□ -0.78
VPS53-203ENST00000401468 LARP4BQ92615 738 aaKnown RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms