RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 GNASQ5JWF2 1037 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 ANKRD40Q6AI12 368 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 PLEKHM3Q6ZWE6 761 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 SCFD1Q8WVM8 642 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 FAM20AQ96MK3 541 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 SEPT5Q99719 369 aaPredicted RBP7.64□□□□□ -1.19
UPF2-203ENST00000397053 MXD3Q9BW11 206 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 FAM96AQ9H5X1 160 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 RAD18Q9NS91 495 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 PSD3Q9NYI0 1048 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 NARFQ9UHQ1 456 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 TRAF3IP3Q9Y228 551 aa7.64□□□□□ -1.19
UPF2-203ENST00000397053 F5H423 210 aaPredicted RBP7.63□□□□□ -1.19
UPF2-203ENST00000397053 F5H6K3 240 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 GFAPP14136 432 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 MDM2Q00987 491 aaPredicted RBP7.63□□□□□ -1.19
UPF2-203ENST00000397053 MAP3K10Q02779 954 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 KLRC3Q07444 240 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 MED21Q13503 144 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 PROSER3Q2NL68 480 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 COBLL1Q53SF7 1204 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 MMS22LQ6ZRQ5 1243 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 TBC1D1Q86TI0 1168 aaPredicted RBP7.63□□□□□ -1.19
UPF2-203ENST00000397053 DDIASQ8IXT1 998 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 KRT78Q8N1N4 520 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 PPM1NQ8N819 430 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 PPHLN1Q8NEY8 458 aaKnown RBP7.63□□□□□ -1.19
UPF2-203ENST00000397053 MRFAP1L1Q96HT8 127 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 SPATA16Q9BXB7 569 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 ZC4H2Q9NQZ6 224 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 LCMT1Q9UIC8 334 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 INSRP06213 1382 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 E9PMD0 336 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 MMP1P03956 469 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 HMOX2P30519 316 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 DEUP1Q05D60 604 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 KYAT1Q16773 422 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 TXNRD1Q16881 649 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 MGAT5BQ3V5L5 792 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 RNF25Q96BH1 459 aaPredicted RBP7.63□□□□□ -1.19
UPF2-203ENST00000397053 POLR3FQ9H1D9 316 aaPredicted RBP7.63□□□□□ -1.19
UPF2-203ENST00000397053 NFU1Q9UMS0 254 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 FAM32AQ9Y421 112 aaKnown RBP7.63□□□□□ -1.19
UPF2-203ENST00000397053 PRAG1Q86YV5 1406 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 SUPT3HB4E1H0 165 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 SUPT3HO75486 399 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 RPS6KA5O75582 802 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 ATP1A1P05023 1023 aaKnown RBP7.63□□□□□ -1.19
UPF2-203ENST00000397053 EFNA5P52803 228 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 GABPB1Q06547 395 aaPredicted RBP7.63□□□□□ -1.19
UPF2-203ENST00000397053 NR1H3Q13133 447 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 SNX17Q15036 470 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 MFSD4BQ5TF39 518 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.63□□□□□ -1.19
UPF2-203ENST00000397053 SYT2Q8N9I0 419 aaPredicted RBP7.63□□□□□ -1.19
UPF2-203ENST00000397053 RAPGEF5Q92565 580 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 OSBPL10Q9BXB5 764 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 ATG3Q9NT62 314 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 CNOT7Q9UIV1 285 aaKnown RBP7.63□□□□□ -1.19
UPF2-203ENST00000397053 A0A0G2JND7 137 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 MIF4GDA9UHW6 222 aaKnown RBP7.63□□□□□ -1.19
UPF2-203ENST00000397053 GUCA1AP43080 201 aaPredicted RBP7.63□□□□□ -1.19
UPF2-203ENST00000397053 ALDH1A3P47895 512 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 DPYDQ12882 1025 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 COG2Q14746 738 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 ALS2CLQ60I27 953 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 IL31Q6EBC2 164 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 SFR1Q86XK3 245 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 GRAMD1CQ8IYS0 662 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 MAP4K1Q92918 833 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 MUC3BQ9H195 1237 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 SLC9A2Q9UBY0 812 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 INTUQ9ULD6 942 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 PCDHA10Q9Y5I2 948 aa7.63□□□□□ -1.19
UPF2-203ENST00000397053 DCDC2CA8MYV0 355 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 ZMYND10O75800 440 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 DDHD2O94830 711 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 FGGP02679 453 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 PRDX5P30044 214 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 MAP2K2P36507 400 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 OR1G1P47890 313 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 OCA2Q04671 838 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 TWF1Q12792 350 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 TEDDM1Q5T9Z0 273 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 CYFIP1Q7L576 1253 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 KDELC2Q7Z4H8 507 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 RNF180Q86T96 592 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 MICALL2Q8IY33 904 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 SH3RF3Q8TEJ3 882 aaPredicted RBP7.62□□□□□ -1.19
UPF2-203ENST00000397053 PABPC5Q96DU9 382 aaKnown RBP7.62□□□□□ -1.19
UPF2-203ENST00000397053 PLEKHA8Q96JA3 519 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 CYTH2Q99418 400 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 PLEKHA5Q9HAU0 1116 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 GIMAP4Q9NUV9 329 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 RBAKQ9NYW8 714 aaPredicted RBP7.62□□□□□ -1.19
UPF2-203ENST00000397053 ATP10AO60312 1499 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 ZNF608Q9ULD9 1512 aaPredicted RBP7.62□□□□□ -1.19
UPF2-203ENST00000397053 STXBP3O00186 592 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 ATP9BO43861 1147 aa7.62□□□□□ -1.19
UPF2-203ENST00000397053 LRG1P02750 347 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms