RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 GALCP54803 685 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 TKFCQ3LXA3 575 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 SLC9A9Q8IVB4 645 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 CAVIN3Q969G5 261 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 ZKSCAN4Q969J2 545 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-204ENST00000392003 JPH2Q9BR39 696 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-204ENST00000392003 PCIF1Q9H4Z3 704 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 RPAP3Q9H6T3 665 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-204ENST00000392003 WRAP73Q9P2S5 460 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-204ENST00000392003 SMCHD1A6NHR9 2005 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 MAPTP10636 758 aaKnown RBP10.43□□□□□ -0.74
COL6A3-204ENST00000392003 NPEPPSP55786 919 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 ZNF280AP59817 542 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-204ENST00000392003 PTPROQ16827 1216 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 APOBEC3FQ8IUX4 373 aaKnown RBP10.43□□□□□ -0.74
COL6A3-204ENST00000392003 GLYCTKQ8IVS8 523 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 SAMD3Q8N6K7 520 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 DBR1Q9UK59 544 aaKnown RBP10.43□□□□□ -0.74
COL6A3-204ENST00000392003 AJAP1Q9UKB5 411 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-204ENST00000392003 NFU1Q9UMS0 254 aa10.43□□□□□ -0.74
COL6A3-204ENST00000392003 TNS1Q9HBL0 1735 aaKnown RBP10.42□□□□□ -0.74
COL6A3-204ENST00000392003 EIF2AK2P19525 551 aaKnown RBP10.42□□□□□ -0.74
COL6A3-204ENST00000392003 DGKZQ13574 1117 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 PCNX4Q63HM2 1172 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 SLC17A8Q8NDX2 589 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 TIPINQ9BVW5 301 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 MAP3K20Q9NYL2 800 aaKnown RBP10.42□□□□□ -0.74
COL6A3-204ENST00000392003 CCDC188H7C350 402 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 GLI1P08151 1106 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 PLS3P13797 630 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 ABCB4P21439 1286 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 CARSP49589 748 aaKnown RBP10.42□□□□□ -0.74
COL6A3-204ENST00000392003 TTLL12Q14166 644 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-204ENST00000392003 SUPT20HL1Q3ZLR7 823 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 CBWD6Q4V339 395 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 CBWD3Q5JTY5 395 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 CBWD5Q5RIA9 395 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 B3GNT9Q6UX72 402 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 XXYLT1Q8NBI6 393 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 NLGN2Q8NFZ4 835 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 WHAMMQ8TF30 809 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 RFFLQ8WZ73 363 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 FIZ1Q96SL8 496 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.42□□□□□ -0.74
COL6A3-204ENST00000392003 KIAA1683Q9H0B3 1180 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 AGO4Q9HCK5 861 aaKnown RBP10.42□□□□□ -0.74
COL6A3-204ENST00000392003 GDF3Q9NR23 364 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 GGA3Q9NZ52 723 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 SUCLA2Q9P2R7 463 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-204ENST00000392003 FZD1Q9UP38 647 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 EXOC7Q9UPT5 735 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 KRIT1O00522 736 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 TMEM253P0C7T8 217 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 USP8P40818 1118 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 VAMP7P51809 220 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 SMTNP53814 917 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 HMGCS2P54868 508 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 XKR9Q5GH70 373 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 ACTRT1Q8TDG2 376 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 PPM1EQ8WY54 764 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 GOLPH3Q9H4A6 298 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 GINM1Q9NU53 330 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 UBIAD1Q9Y5Z9 338 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 EMSYQ7Z589 1322 aa10.42□□□□□ -0.74
COL6A3-204ENST00000392003 ESYT3A0FGR9 886 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 GUCY2FP51841 1108 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 JAK3P52333 1124 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 IRX1P78414 480 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 ARHGEF16Q5VV41 709 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 KCNV1Q6PIU1 500 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 HAUS6Q7Z4H7 955 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 MAATS1Q7Z4T9 603 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 DNAAF5Q86Y56 855 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 METTL13Q8N6R0 699 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 LRRC57Q8N9N7 239 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 IL31RAQ8NI17 732 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 UBE2TQ9NPD8 197 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 ZNF646O15015 1829 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 RPTORQ8N122 1335 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 TESPA1A2RU30 521 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 P4HA2O15460 535 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 RAD51CO43502 376 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 LRRN2O75325 713 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 VCAM1P19320 739 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 YWHABP31946 246 aaKnown RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 SFNP31947 248 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 RARRES1P49788 294 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 MAPK7Q13164 816 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 ZNF280CQ8ND82 737 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 SYTL5Q8TDW5 730 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 ZBED3Q96IU2 234 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 NAP1L3Q99457 506 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 SUDS3Q9H7L9 328 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 LMCD1Q9NZU5 365 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 COL20A1Q9P218 1284 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 NOC2LQ9Y3T9 749 aaKnown RBP10.41□□□□□ -0.74
COL6A3-204ENST00000392003 GOLGA6L10A6NI86 522 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 CCDC169A6NNP5 214 aa10.41□□□□□ -0.74
COL6A3-204ENST00000392003 WDR64B1ANS9 1081 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms