RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 INPP5FQ9Y2H2 1132 aa24.12■■□□□ 1.45
CCDC28B-201ENST00000373602 CARNS1A5YM72 827 aa24.11■■□□□ 1.45
CCDC28B-201ENST00000373602 SSTR3P32745 418 aaPredicted RBP24.11■■□□□ 1.45
CCDC28B-201ENST00000373602 TOB1P50616 345 aaPredicted RBP24.11■■□□□ 1.45
CCDC28B-201ENST00000373602 MBTD1Q05BQ5 628 aa24.11■■□□□ 1.45
CCDC28B-201ENST00000373602 NBR1Q14596 966 aa24.11■■□□□ 1.45
CCDC28B-201ENST00000373602 ADHFE1Q8IWW8 467 aa24.11■■□□□ 1.45
CCDC28B-201ENST00000373602 POLR3FQ9H1D9 316 aaPredicted RBP24.11■■□□□ 1.45
CCDC28B-201ENST00000373602 NRDE2Q9H7Z3 1164 aa24.11■■□□□ 1.45
CCDC28B-201ENST00000373602 BARX2Q9UMQ3 279 aaPredicted RBP24.11■■□□□ 1.45
CCDC28B-201ENST00000373602 KIF3AQ9Y496 699 aa24.11■■□□□ 1.45
CCDC28B-201ENST00000373602 CNTNAP2Q9UHC6 1331 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 C19orf67A6NJJ6 358 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 NT5C1B-RDH14C9J2C7 533 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 INO80B-WBP1J3KQ70 363 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 ZC3H11AO75152 810 aaKnown RBP eCLIP24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 NCLP19338 710 aaKnown RBP24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 FXR2P51116 673 aaKnown RBP eCLIP24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 NOTUMQ6P988 496 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 POTEGQ6S5H5 508 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 TMC7Q7Z402 723 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 SMRP1Q8NCR6 262 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 CNNM3Q8NE01 707 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 MCPH1Q8NEM0 835 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 VN1R2Q8NFZ6 395 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 CCDC51Q96ER9 411 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 TMEM169Q96HH4 297 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 TMX3Q96JJ7 454 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 RSAD1Q9HA92 442 aa24.1■■□□□ 1.45
CCDC28B-201ENST00000373602 HIDE1A8MVS5 230 aa24.09■■□□□ 1.45
CCDC28B-201ENST00000373602 PI4K2BG5E9Z4 385 aa24.09■■□□□ 1.45
CCDC28B-201ENST00000373602 CD2BP2O95400 341 aaKnown RBP24.09■■□□□ 1.45
CCDC28B-201ENST00000373602 GALTP07902 379 aa24.09■■□□□ 1.45
CCDC28B-201ENST00000373602 MUTP22033 750 aa24.09■■□□□ 1.45
CCDC28B-201ENST00000373602 NCBP1Q09161 790 aaKnown RBP24.09■■□□□ 1.45
CCDC28B-201ENST00000373602 KCNC3Q14003 757 aa24.09■■□□□ 1.45
CCDC28B-201ENST00000373602 AMHR2Q16671 573 aa24.09■■□□□ 1.45
CCDC28B-201ENST00000373602 TMEM184AQ6ZMB5 413 aa24.09■■□□□ 1.45
CCDC28B-201ENST00000373602 SMG8Q8ND04 991 aaKnown RBP24.09■■□□□ 1.45
CCDC28B-201ENST00000373602 URGCPQ8TCY9 931 aa24.09■■□□□ 1.45
CCDC28B-201ENST00000373602 GPRC5CQ9NQ84 441 aa24.09■■□□□ 1.45
CCDC28B-201ENST00000373602 RBM10P98175 930 aaKnown RBP24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 RNASELQ05823 741 aaKnown RBP24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 SMC1AQ14683 1233 aaKnown RBP24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 HAUS3Q68CZ6 603 aa24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 MAEAQ7L5Y9 396 aa24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 TMEM173Q86WV6 379 aaPredicted RBP24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 IGSF21Q96ID5 467 aa24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 CPB2Q96IY4 423 aa24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 EIF2AQ9BY44 585 aaKnown RBP24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 CSRNP2Q9H175 543 aa24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 UBN1Q9NPG3 1134 aa24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 KANSL3Q9P2N6 904 aa24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 IPPQ9Y573 584 aa24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 PCDHB6Q9Y5E3 794 aa24.08■■□□□ 1.45
CCDC28B-201ENST00000373602 ARF4P18085 180 aaPredicted RBP24.07■■□□□ 1.44
CCDC28B-201ENST00000373602 AFF1P51825 1210 aaKnown RBP24.07■■□□□ 1.44
CCDC28B-201ENST00000373602 PTGDRQ13258 359 aa24.07■■□□□ 1.44
CCDC28B-201ENST00000373602 PDIA5Q14554 519 aa24.07■■□□□ 1.44
CCDC28B-201ENST00000373602 PADI6Q6TGC4 694 aa24.07■■□□□ 1.44
CCDC28B-201ENST00000373602 ZNF280BQ86YH2 543 aa24.07■■□□□ 1.44
CCDC28B-201ENST00000373602 MRPL43Q8N983 215 aaKnown RBP24.07■■□□□ 1.44
CCDC28B-201ENST00000373602 GBP3Q9H0R5 595 aa24.07■■□□□ 1.44
CCDC28B-201ENST00000373602 DNAJB4Q9UDY4 337 aa24.07■■□□□ 1.44
CCDC28B-201ENST00000373602 LRWD1Q9UFC0 647 aa24.07■■□□□ 1.44
CCDC28B-201ENST00000373602 B4GALT3O60512 393 aa24.06■■□□□ 1.44
CCDC28B-201ENST00000373602 ITGA4P13612 1032 aa24.06■■□□□ 1.44
CCDC28B-201ENST00000373602 CYP11B2P19099 503 aa24.06■■□□□ 1.44
CCDC28B-201ENST00000373602 CCT6AP40227 531 aaKnown RBP24.06■■□□□ 1.44
CCDC28B-201ENST00000373602 SLC11A1P49279 550 aa24.06■■□□□ 1.44
CCDC28B-201ENST00000373602 MCM2P49736 904 aa24.06■■□□□ 1.44
CCDC28B-201ENST00000373602 ECM1Q16610 540 aa24.06■■□□□ 1.44
CCDC28B-201ENST00000373602 DDX53Q86TM3 631 aaKnown RBP24.06■■□□□ 1.44
CCDC28B-201ENST00000373602 IGSF22Q8N9C0 903 aa24.06■■□□□ 1.44
CCDC28B-201ENST00000373602 TBC1D32Q96NH3 1257 aa24.06■■□□□ 1.44
CCDC28B-201ENST00000373602 ARHGEF35A5YM69 484 aa24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 C2orf71A6NGG8 1288 aa24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 LRRIQ4A6NIV6 560 aa24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 LAD1O00515 517 aa24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 INPPL1O15357 1258 aa24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 DDHD2O94830 711 aa24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 SRGAP2BP0DMP2 458 aa24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 BMS1Q14692 1282 aaKnown RBP24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 CDCA2Q69YH5 1023 aaPredicted RBP24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 VPS52Q8N1B4 723 aa24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 BCL7CQ8WUZ0 217 aaPredicted RBP24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 POP1Q99575 1024 aaKnown RBP24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 TMEM175Q9BSA9 504 aa24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 ZBP1Q9H171 429 aa24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 RNF39Q9H2S5 420 aa24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 STK24Q9Y6E0 443 aa24.05■■□□□ 1.44
CCDC28B-201ENST00000373602 B4GALT5O43286 388 aa24.04■■□□□ 1.44
CCDC28B-201ENST00000373602 POMCP01189 267 aa24.04■■□□□ 1.44
CCDC28B-201ENST00000373602 GJB2P29033 226 aa24.04■■□□□ 1.44
CCDC28B-201ENST00000373602 PPP4R3CPQ6ZMV5 832 aa24.04■■□□□ 1.44
CCDC28B-201ENST00000373602 FAM193BQ96PV7 902 aaPredicted RBP24.04■■□□□ 1.44
CCDC28B-201ENST00000373602 RAB34Q9BZG1 259 aa24.04■■□□□ 1.44
CCDC28B-201ENST00000373602 USP15Q9Y4E8 981 aaPredicted RBP24.04■■□□□ 1.44
CCDC28B-201ENST00000373602 A0A1B0GUA9 196 aa24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms