RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 RAG1P15918 1043 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 GJA9P57773 515 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 FKBP3Q00688 224 aaKnown RBP12.54□□□□□ -0.4
USF1-201ENST00000368019 GRB10Q13322 594 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 BIRC3Q13489 604 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 CDC37Q16543 378 aaPredicted RBP12.54□□□□□ -0.4
USF1-201ENST00000368019 TMEM119Q4V9L6 283 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 ZCWPW2Q504Y3 356 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 HYIQ5T013 277 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 MEI1Q5TIA1 1274 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 AGBL2Q5U5Z8 902 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 SFMBT2Q5VUG0 894 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 NFRKBQ6P4R8 1299 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 PPP4R3CPQ6ZMV5 832 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 CACNA2D4Q7Z3S7 1137 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 RASGRP4Q8TDF6 673 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 LRRC45Q96CN5 670 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 RRP36Q96EU6 259 aaKnown RBP12.54□□□□□ -0.4
USF1-201ENST00000368019 MTMR9Q96QG7 549 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 NAP1L4Q99733 375 aaKnown RBP12.54□□□□□ -0.4
USF1-201ENST00000368019 ISCUQ9H1K1 167 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 ABHD16BQ9H3Z7 469 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 ACTR5Q9H9F9 607 aaPredicted RBP12.54□□□□□ -0.4
USF1-201ENST00000368019 BLOC1S4Q9NUP1 217 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 TMEM39AQ9NV64 488 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 AIPL1Q9NZN9 384 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 FBXO40Q9UH90 709 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 LRRC37A2A6NM11 1700 aa12.54□□□□□ -0.4
USF1-201ENST00000368019 DCDC2CA8MYV0 355 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 PPP1R37O75864 691 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 HEXIM1O94992 359 aaKnown RBP12.53□□□□□ -0.4
USF1-201ENST00000368019 TIMP1P01033 207 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 PLEKP08567 350 aaPredicted RBP12.53□□□□□ -0.4
USF1-201ENST00000368019 FDX1P10109 184 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 BMP3P12645 472 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 LSP1P33241 339 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 FNTAP49354 379 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 NAPAP54920 295 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 GSCP56915 257 aaPredicted RBP12.53□□□□□ -0.4
USF1-201ENST00000368019 SETQ01105 290 aaPredicted RBP12.53□□□□□ -0.4
USF1-201ENST00000368019 FPGSQ05932 587 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 MTMR3Q13615 1198 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 SLC18A3Q16572 532 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 SLC35G1Q2M3R5 365 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 SLFN13Q68D06 897 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 ARMCX2Q7L311 632 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 RRAGAQ7L523 313 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 HEATR3Q7Z4Q2 680 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 LRRC47Q8N1G4 583 aaKnown RBP12.53□□□□□ -0.4
USF1-201ENST00000368019 STAG2Q8N3U4 1231 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 FAM133AQ8N9E0 248 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 MAFAQ8NHW3 353 aaPredicted RBP12.53□□□□□ -0.4
USF1-201ENST00000368019 HDAC7Q8WUI4 952 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 MYLIPQ8WY64 445 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 RAD54LQ92698 747 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 ARL8AQ96BM9 186 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 RNPC3Q96LT9 517 aaKnown RBP12.53□□□□□ -0.4
USF1-201ENST00000368019 MYCBPQ99417 103 aaPredicted RBP12.53□□□□□ -0.4
USF1-201ENST00000368019 MMRN2Q9H8L6 949 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 RBM12Q9NTZ6 932 aaKnown RBP12.53□□□□□ -0.4
USF1-201ENST00000368019 COL4A3BPQ9Y5P4 624 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 BZW2Q9Y6E2 419 aaKnown RBP12.53□□□□□ -0.4
USF1-201ENST00000368019 ZNF536O15090 1300 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 KDM3AQ9Y4C1 1321 aa12.53□□□□□ -0.4
USF1-201ENST00000368019 MYMKA6NI61 221 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 CCNT1O60563 726 aaKnown RBP12.52□□□□□ -0.41
USF1-201ENST00000368019 PLA2G6O60733 806 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 GFPT2O94808 682 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 FAM107AO95990 144 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 ASGR1P07306 291 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 PAEPP09466 180 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 TSPY3P0CV98 308 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 TSPY8P0CW00 308 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 NR1D1P20393 614 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 HNRNPH1P31943 449 aaKnown RBP12.52□□□□□ -0.41
USF1-201ENST00000368019 MDH1P40925 334 aaKnown RBP12.52□□□□□ -0.41
USF1-201ENST00000368019 NAP1L1P55209 391 aaKnown RBP12.52□□□□□ -0.41
USF1-201ENST00000368019 KCNMA1Q12791 1236 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 PTGISQ16647 500 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 NAA35Q5VZE5 725 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 RUFY4Q6ZNE9 571 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 C16orf59Q7L2K0 433 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 ANKRD35Q8N283 1001 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 OTUD6BQ8N6M0 293 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 PCSK9Q8NBP7 692 aaKnown RBP12.52□□□□□ -0.41
USF1-201ENST00000368019 ACTRT1Q8TDG2 376 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 MTMR8Q96EF0 704 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 GMCL1Q96IK5 515 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 CDK5RAP3Q96JB5 506 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 CABS1Q96KC9 395 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 GLT1D1Q96MS3 346 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 CCDC43Q96MW1 224 aaKnown RBP12.52□□□□□ -0.41
USF1-201ENST00000368019 PNMA5Q96PV4 448 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 TMEM47Q9BQJ4 181 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 TMBIM4Q9HC24 238 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 INTUQ9ULD6 942 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 CHD7Q9P2D1 2997 aa12.52□□□□□ -0.41
USF1-201ENST00000368019 SPTBN5Q9NRC6 3674 aaKnown RBP12.51□□□□□ -0.41
USF1-201ENST00000368019 A0A0A6YYK5 440 aaPredicted RBP12.51□□□□□ -0.41
USF1-201ENST00000368019 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms