RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 GDF11O95390 407 aa9.19□□□□□ -0.94
SYNE1-206ENST00000367253 GCNT3O95395 438 aa9.19□□□□□ -0.94
SYNE1-206ENST00000367253 PARNO95453 639 aaKnown RBP9.19□□□□□ -0.94
SYNE1-206ENST00000367253 ASMTLO95671 621 aa9.19□□□□□ -0.94
SYNE1-206ENST00000367253 PDIA3P30101 505 aaKnown RBP9.19□□□□□ -0.94
SYNE1-206ENST00000367253 ATP8B2P98198 1209 aa9.19□□□□□ -0.94
SYNE1-206ENST00000367253 PRAMEF18Q5VWM3 479 aa9.19□□□□□ -0.94
SYNE1-206ENST00000367253 CCDC105Q8IYK2 499 aa9.19□□□□□ -0.94
SYNE1-206ENST00000367253 SYCE1Q8N0S2 351 aa9.19□□□□□ -0.94
SYNE1-206ENST00000367253 ZNF557Q8N988 423 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-206ENST00000367253 SPATA33Q96N06 139 aa9.19□□□□□ -0.94
SYNE1-206ENST00000367253 NOC4LQ9BVI4 516 aaKnown RBP9.19□□□□□ -0.94
SYNE1-206ENST00000367253 DBNLQ9UJU6 430 aaKnown RBP9.19□□□□□ -0.94
SYNE1-206ENST00000367253 SAR1BQ9Y6B6 198 aa9.19□□□□□ -0.94
SYNE1-206ENST00000367253 NCOA3Q9Y6Q9 1424 aa9.19□□□□□ -0.94
SYNE1-206ENST00000367253 HNRNPDLO14979 420 aaKnown RBP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 LMNAP02545 664 aaKnown RBP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 PDHA1P08559 390 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 TXNP10599 105 aaKnown RBP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 CHRNA5P30532 468 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 OCA2Q04671 838 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 PPP2R5EQ16537 467 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 MAP1SQ66K74 1059 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 SCYL3Q8IZE3 742 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 SCFD2Q8WU76 684 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 CAPNS2Q96L46 248 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 RNPC3Q96LT9 517 aaKnown RBP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 LRGUKQ96M69 825 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 TEX13BQ9BXU2 312 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 SEZ6LQ9BYH1 1024 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 IGFLR1Q9H665 355 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 SCHIP1Q9P0W5 487 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 PFASO15067 1338 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 ABCB11O95342 1321 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 APOL1O14791 398 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 ATP5HO75947 161 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 GYG1P46976 350 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 GUCY2FP51841 1108 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 CDR2Q01850 454 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 CENPCQ03188 943 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 CRYMQ14894 314 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 PIK3AP1Q6ZUJ8 805 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 SPICE1Q8N0Z3 855 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 GPC2Q8N158 579 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 NME8Q8N427 588 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 CEP19Q96LK0 163 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 RUNDC3BQ96NL0 473 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 NOP53Q9NZM5 478 aaKnown RBP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 EDARQ9UNE0 448 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 CLCA2Q9UQC9 943 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 GPR182O15218 404 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 NKRFO15226 690 aaKnown RBP eCLIP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 ARL4AP40617 200 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 MLH1P40692 756 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 CUL1Q13616 776 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 KCNB1Q14721 858 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 SH3BP5LQ7L8J4 393 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 ENOX1Q8TC92 643 aaKnown RBP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 RIPOR3Q96MK2 946 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 MROH8Q9H579 483 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 RRN3Q9NYV6 651 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 SMCO2A6NFE2 343 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 POLR2DO15514 142 aaKnown RBP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 POTEIP0CG38 1075 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 VCLP18206 1134 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 MAPK6Q16659 721 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 TJAP1Q5JTD0 557 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 RINT1Q6NUQ1 792 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 SCYL2Q6P3W7 929 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 RAB44Q7Z6P3 723 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 CDH24Q86UP0 819 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 MCPH1Q8NEM0 835 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 PIP4K2CQ8TBX8 421 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 TRPC7Q9HCX4 862 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 EPS15L1Q9UBC2 864 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 DBR1Q9UK59 544 aaKnown RBP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 ZNF197O14709 1029 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 PQBP1O60828 265 aaKnown RBP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 PSMA3P25788 255 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 HIRAP54198 1017 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-206ENST00000367253 DGKDQ16760 1214 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 SGO2Q562F6 1265 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 JADE1Q6IE81 842 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 FAM178BQ8IXR5 827 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 ZSCAN1Q8NBB4 408 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 TTLL11Q8NHH1 800 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 SPACA7Q96KW9 195 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 MKNK1Q9BUB5 465 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 ABCF3Q9NUQ8 709 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 STK39Q9UEW8 545 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 TMCC3Q9ULS5 477 aa9.18□□□□□ -0.94
SYNE1-206ENST00000367253 K7ENM7 598 aa9.17□□□□□ -0.94
SYNE1-206ENST00000367253 ARID5BQ14865 1188 aa9.17□□□□□ -0.94
SYNE1-206ENST00000367253 ATAD3BQ5T9A4 648 aa9.17□□□□□ -0.94
SYNE1-206ENST00000367253 DCAF4Q8WV16 495 aa9.17□□□□□ -0.94
SYNE1-206ENST00000367253 POMGNT1Q8WZA1 660 aa9.17□□□□□ -0.94
SYNE1-206ENST00000367253 RAD21L1Q9H4I0 556 aa9.17□□□□□ -0.94
SYNE1-206ENST00000367253 SFMBT1Q9UHJ3 866 aa9.17□□□□□ -0.94
SYNE1-206ENST00000367253 ZC3H4Q9UPT8 1303 aaKnown RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms