RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 GDF9O60383 454 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 DDHD2O94830 711 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 PAPLNO95428 1278 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 EIF4BP23588 611 aaKnown RBP9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 SPEM2Q0P670 501 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 FZD5Q13467 585 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 LPAL2Q16609 132 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 IMMTQ16891 758 aaKnown RBP9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 ODR4Q5SWX8 454 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 PDXDC2PQ6P474 469 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 PARM1Q6UWI2 310 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 PPFIBP1Q86W92 1011 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 TICAM2Q86XR7 235 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 LRRC71Q8N4P6 559 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 SRBD1Q8N5C6 995 aaKnown RBP9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 METTL13Q8N6R0 699 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 TTC13Q8NBP0 860 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 FGF14Q92915 247 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 CNNM2Q9H8M5 875 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 PCDHGA2Q9Y5H1 932 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 PATJQ8NI35 1801 aa9.66□□□□□ -0.86
HMGB1P39-201ENST00000366304 GCN1Q92616 2671 aaKnown RBP9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 KANSL1LA0AUZ9 987 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 F8W810 466 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 C2CD2LO14523 706 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 SLC30A4O14863 429 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 BACH1O14867 736 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 IFIT3O14879 490 aaKnown RBP9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 INPPL1O15357 1258 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 TEX28O15482 410 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 LAMTOR5O43504 91 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 OFD1O75665 1012 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 EFEMP2O95967 443 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 TDGF1P13385 188 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 DARSP14868 501 aaKnown RBP9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 ZSCAN20P17040 1043 aaPredicted RBP9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 SLC26A2P50443 739 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 DRP2Q13474 957 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 GIT2Q14161 759 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 SWSAP1Q6NVH7 229 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 GPR161Q8N6U8 529 aaKnown RBP9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 TMEM87AQ8NBN3 555 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 IGDCC4Q8TDY8 1250 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 ATRIPQ8WXE1 791 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 RRP36Q96EU6 259 aaKnown RBP9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 SDF4Q9BRK5 362 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 GBP3Q9H0R5 595 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 ZNF302Q9NR11 478 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 ZSCAN32Q9NX65 697 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 INPP5FQ9Y2H2 1132 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 ITPR1Q14643 2758 aa9.65□□□□□ -0.86
HMGB1P39-201ENST00000366304 CNOT1A5YKK6 2376 aaKnown RBP9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 FAM170BA6NMN3 283 aa9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 MEIS1O00470 390 aa9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 ADAMTS3O15072 1205 aa9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 TARSP26639 723 aaKnown RBP9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 PMLP29590 882 aa9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 PHKA2P46019 1235 aa9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 GPC3P51654 580 aa9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 MFAP1P55081 439 aaKnown RBP9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 NOMO2Q5JPE7 1267 aa9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 EFCAB12Q6NXP0 572 aa9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 GET4Q7L5D6 327 aaPredicted RBP9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 SMG7Q92540 1137 aaKnown RBP9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 TNPO1Q92973 898 aaKnown RBP9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 MRPL9Q9BYD2 267 aaKnown RBP9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 RHOBTB2Q9BYZ6 727 aa9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 MARCH5Q9NX47 278 aa9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 AKT3Q9Y243 479 aa9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 MAFBQ9Y5Q3 323 aaPredicted RBP9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 EVPLQ92817 2033 aa9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 AKAP13Q12802 2813 aa9.64□□□□□ -0.87
HMGB1P39-201ENST00000366304 FAM86B1E9PN63 330 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 ZNF862O60290 1169 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 CYP21A2P08686 494 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 FAM86B2P0C5J1 330 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 RXRAP19793 462 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 NTHL1P78549 312 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 BMS1Q14692 1282 aaKnown RBP9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 UBXN2BQ14CS0 331 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 ACAP1Q15027 740 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 NONOQ15233 471 aaKnown RBP eCLIP9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 CEP55Q53EZ4 464 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 SLC44A4Q53GD3 710 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 N4BP2L1Q5TBK1 243 aaPredicted RBP9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 FAM160B1Q5W0V3 765 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 AGMOQ6ZNB7 445 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 RAB11FIP4Q86YS3 637 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 NXPE3Q969Y0 559 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 CLDN23Q96B33 292 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 B3GALT6Q96L58 329 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 RPS6KC1Q96S38 1066 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 EMILIN2Q9BXX0 1053 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 BCO2Q9BYV7 579 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 NT5C3AQ9H0P0 336 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 LY9Q9HBG7 655 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 LTB4R2Q9NPC1 389 aa9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 PRMT8Q9NR22 394 aaPredicted RBP9.63□□□□□ -0.87
HMGB1P39-201ENST00000366304 SH2B1Q9NRF2 756 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms